Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00272
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        86   2e-17
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        86   2e-17
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        86   2e-17
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +3

Query: 255 PLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXX 428
           P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD           
Sbjct: 101 PALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHV 160

Query: 429 XXXXTATDVIHS*TIPSLGVKVDANPGD*IKQTSLLI 539
               TA DVIHS  +P+L VK+DA PG  + QT   I
Sbjct: 161 RVLITAADVIHSFAVPALAVKMDAVPGR-LNQTGFFI 196



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +2

Query: 509 RLNQTNFFINRPGIFFGPCSEICGANHSFIPIVMKVFQSKLY 634
           RLNQT FFI RPG+F+G CSEICGANHSF+PIV++      Y
Sbjct: 188 RLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVSLDKY 229



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 1   NLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TI 180
           +LQ+ A P++E+                             K   R+L++G ++E+I TI
Sbjct: 16  SLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTI 75

Query: 181 IPAFTLIFIA 210
           IPA  LIFIA
Sbjct: 76  IPAIILIFIA 85


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +3

Query: 255 PLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXX 428
           P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD           
Sbjct: 101 PALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHV 160

Query: 429 XXXXTATDVIHS*TIPSLGVKVDANPGD*IKQTSLLI 539
               TA DVIHS  +P+L VK+DA PG  + QT   I
Sbjct: 161 RVLITAADVIHSFAVPALAVKMDAVPGR-LNQTGFFI 196



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +2

Query: 509 RLNQTNFFINRPGIFFGPCSEICGANHSFIPIVMKVFQSKLY 634
           RLNQT FFI RPG+F+G CSEICGANHSF+PIV++      Y
Sbjct: 188 RLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVSLDKY 229



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 1   NLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TI 180
           +LQ+ A P++E+                             K   R+L++G ++E+I TI
Sbjct: 16  SLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTI 75

Query: 181 IPAFTLIFIA 210
           IPA  LIFIA
Sbjct: 76  IPAIILIFIA 85


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +3

Query: 255 PLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXX 428
           P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD           
Sbjct: 101 PALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHV 160

Query: 429 XXXXTATDVIHS*TIPSLGVKVDANPGD*IKQTSLLI 539
               TA DVIHS  +P+L VK+DA PG  + QT   I
Sbjct: 161 RVLITAADVIHSFAVPALAVKMDAVPGR-LNQTGFFI 196



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 1   NLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TI 180
           +LQ+ A P++E+                             K   R+L++G ++E+I TI
Sbjct: 16  SLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTI 75

Query: 181 IPAFTLIFIA 210
           IPA  LIFIA
Sbjct: 76  IPAIILIFIA 85


>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 402 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFS 292
           YD +H    IHY   H+  ++   IQYY   NIH ++
Sbjct: 31  YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYN 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,968
Number of Sequences: 59808
Number of extensions: 191143
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)