Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00271
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 81 2e-16
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 59 6e-10
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 57 3e-09
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 46 4e-06
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 40 4e-04
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 34 0.024
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 33 0.031
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 32 0.073
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 32 0.096
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 26 6.3
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 8.3
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 8.3
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 81.0 bits (191), Expect = 2e-16
Identities = 46/93 (49%), Positives = 56/93 (60%)
Frame = +3
Query: 303 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVS 482
NK EAE+LK EGN + A+ Y +AL+ YT+AIEIDP + VYY NRAAA+ +L E AV
Sbjct: 79 NKEEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVE 138
Query: 483 DCTTALALHLTIARRTDALGSRSLPSRDTARRA 581
D T L+L AR LG L D A A
Sbjct: 139 DALTCLSLDPHHARAFGRLGRAKLSLGDAAAAA 171
Score = 43.2 bits (97), Expect = 4e-05
Identities = 17/43 (39%), Positives = 31/43 (72%)
Frame = +1
Query: 118 VAASIVNFLKQQLDGDSLSPDSRESVEVGVQCIETAFELTTED 246
V A+I+++LKQ + S+S + +ES+EV QCI+ +F++ E+
Sbjct: 6 VTAAIIDYLKQAITTGSISEEEKESLEVAAQCIQDSFKIKPEE 48
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 59.3 bits (137), Expect = 6e-10
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = +3
Query: 318 ERLKNEGNELMKAERYNEALEKYTRAIEIDPRN----AVYYCNRAAAHFRLCDPEAAVSD 485
E KN+GN+L + Y +A EKY+ A++IDP N A Y NRA RL PE A+SD
Sbjct: 224 ENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSD 283
Query: 486 CTTALAL 506
ALA+
Sbjct: 284 SDNALAI 290
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAIEI--DPRNAVYYCNRAAAHFRLCDPEAAVSD 485
AE+ K GN K ++Y EA++ YT AI++ D A+YY NRAA + ++ + E A+ D
Sbjct: 23 AEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCD 81
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 56.8 bits (131), Expect = 3e-09
Identities = 26/63 (41%), Positives = 40/63 (63%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCT 491
EA LKNE N+ +K +A++ YT+AIE+D NA+ Y NR+ AH + D A++D +
Sbjct: 4 EALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDAS 63
Query: 492 TAL 500
A+
Sbjct: 64 KAI 66
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +3
Query: 348 MKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALAL 506
+K+E Y A+ ++AIE DP A Y RA AH + P+ AV D ALAL
Sbjct: 50 LKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALAL 102
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 46.4 bits (105), Expect = 4e-06
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTT 494
AE LK +GN + Y A++ +T+AI +D RN + Y NR+A + D A+ D T
Sbjct: 2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATK 61
Query: 495 ALALHLTIARRTDALGS--RSLPSRDTARRA 581
L A+ G+ L D AR A
Sbjct: 62 CTELKPDWAKGWSRKGAALHGLGDLDAARSA 92
Score = 45.6 bits (103), Expect = 7e-06
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCT 491
+AE + +GNEL K+ + A+++YT + P + + NRAAA+ ++ P + DC
Sbjct: 398 KAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCN 457
Query: 492 TALALHLTIAR 524
A+ L A+
Sbjct: 458 KAIELDPNFAK 468
Score = 33.5 bits (73), Expect = 0.031
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +3
Query: 300 ANKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAV 479
A K +A++ K GNE K + A+E+Y +A + ++ Y N AAA+F + +
Sbjct: 260 ALKKKADQEKQIGNENYKKRNFPVAIEQYKKAWD-TYKDITYLNNLAAAYFEADQLDDCI 318
Query: 480 SDCTTAL 500
C A+
Sbjct: 319 KTCEDAI 325
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 330 NEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTA 497
N +K E + +AIE+DP A Y +A A F L D + C A
Sbjct: 438 NRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEA 493
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTT 494
A LK GN+ + Y A++ YT+AI + +++ NRAA + + D E + D +
Sbjct: 151 AAELKTLGNKAYGQKEYANAIDYYTQAITCS-HDPIFFSNRAACYAAIGDFEQVIKDTSE 209
Query: 495 ALAL 506
AL+L
Sbjct: 210 ALSL 213
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 33.9 bits (74), Expect = 0.024
Identities = 19/82 (23%), Positives = 42/82 (51%)
Frame = +3
Query: 300 ANKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAV 479
A+ +A+ G + ++YN+A E Y +A+ D RN ++C+ ++++ + A+
Sbjct: 579 ADDTDAQSWYLIGRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDAL 638
Query: 480 SDCTTALALHLTIARRTDALGS 545
+ A+ L+ I+ LG+
Sbjct: 639 DAYSRAIRLNPYISEVWYDLGT 660
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 33.5 bits (73), Expect = 0.031
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAI--EIDPRN--AVYYCNRAAAHFRLCDPEAAVS 482
A+ + GNE ++RY +A E YT+A+ + ++ Y NRAA + + ++
Sbjct: 64 AQNFREHGNECFASKRYKDAEEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLN 123
Query: 483 DCTTALALHLTIAR 524
DC L T A+
Sbjct: 124 DCAQVLQRDSTHAK 137
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 32.3 bits (70), Expect = 0.073
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 306 KAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNA 419
+A R+ N+ +L + + Y +A++ Y +AI+ DP+NA
Sbjct: 631 QAREFRVHNDREKLKRQKLYIKAIQSYDQAIKFDPKNA 668
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 336 GNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCD 464
G E + E++ T A+E +P N N A F+LC+
Sbjct: 751 GRESKNVDYLKESVRYATLALEKNPENPSLLFNVAFVQFQLCE 793
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 31.9 bits (69), Expect = 0.096
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Frame = +3
Query: 300 ANKAEAERLKNEGNELMKAERYNEALEKYTRAIEI-------DP------RNAVYYCNRA 440
A + ++K NE K ++Y EA + Y A+++ +P +V CNRA
Sbjct: 57 ALSTQVNKMKQTANEAFKRKKYEEAKKLYGLALQLALNRCTWEPSILTREEASVMLCNRA 116
Query: 441 AAHFRLCDPEAAVSDCTTALAL 506
AA L A++D AL +
Sbjct: 117 AAEIALSQFPEALADANAALKI 138
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.6
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 214 IETAFELTTEDAARAWT-YCSLSVSDWGRPLTRLKPNDSRTKATSS*KLSVTTKRLKST- 387
+ ++ +T+ A T S SV + P+T +S T TSS L+ +T ST
Sbjct: 3378 VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTV 3437
Query: 388 ---RAP*RSTQETRSTTAIARLRISGCATP 468
P S+ S+TAIA I +TP
Sbjct: 3438 VNSSTPITSSSVLNSSTAIASSSILNSSTP 3467
Score = 25.4 bits (53), Expect = 8.3
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Frame = +1
Query: 214 IETAFELTTEDAARAWT-YCSLSVSDWGRPLTRLKPNDSRTKATSS*KLS----VTTKRL 378
+ T+ +T+ + T S SV + P+T ++ T TSS L+ +T+ +
Sbjct: 3042 LNTSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSSI 3101
Query: 379 KSTRAP*RSTQETRSTTAIARLRISGCATPRQR*ATVPQHSPYT 510
++ P S+ S+TAI I +TP + + +P T
Sbjct: 3102 VNSSTPITSSSVLNSSTAITSSSILNSSTPITSSSILNSSTPIT 3145
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 294 PPANKAEA-ERLKNEGNELMKAERYNEALEKYTRAI 398
P ++ + A E+L +GN + Y EA++KY +A+
Sbjct: 24 PSSSDSRAIEQLVTQGNMAYAQKNYEEAVDKYGQAL 59
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 620 ESYRENLQLADQTLAQRPNDLSGLLRNPAL 709
+S R+ L++A T Q GLL NPAL
Sbjct: 212 KSLRKGLEIAKYTETQGIMSARGLLENPAL 241
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 238 TEDAARAWTYCSLSVSDWGRPLTRLKPNDSRTKATSS*KLSVTTKRLKSTR 390
T+D A++ C ++DW R KP S +SS S T S++
Sbjct: 334 TQDCC-AFSQCLSKIADWLRSCRLTKPESSSVPPSSSISRSSTIHSCTSSK 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,804
Number of Sequences: 5004
Number of extensions: 44912
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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