Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00271
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 52 5e-07
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14) 44 1e-04
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15) 43 2e-04
SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17) 43 2e-04
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15) 42 5e-04
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 42 5e-04
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 39 0.005
SB_42258| Best HMM Match : TPR_2 (HMM E-Value=0.006) 38 0.006
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36) 37 0.014
SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10) 37 0.019
SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 36 0.025
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06) 36 0.044
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021) 33 0.18
SB_17634| Best HMM Match : TPR_2 (HMM E-Value=0.06) 32 0.54
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 32 0.54
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09) 31 0.72
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 31 1.3
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 30 2.2
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 30 2.2
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_49426| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_20703| Best HMM Match : TPR_1 (HMM E-Value=0) 28 6.7
SB_14077| Best HMM Match : TPR_1 (HMM E-Value=0) 28 6.7
SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_51634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10) 28 6.7
SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10) 28 8.9
SB_21748| Best HMM Match : TPR_1 (HMM E-Value=0) 28 8.9
SB_40987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_26625| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.9
>SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 62.9 bits (146), Expect = 3e-10
Identities = 26/45 (57%), Positives = 36/45 (80%)
Frame = +3
Query: 303 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNR 437
++ +AE LKNEGN+LMK E++ EA+ Y+RAIE+D N+VY CNR
Sbjct: 87 DRQKAEELKNEGNQLMKEEKFQEAINSYSRAIELDNTNSVYPCNR 131
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 97 MSNEIKIVAASIVNFLKQQLDGDSLSPDSRESVEVGVQCIETAFELTTEDAAR 255
MSN ++ A I+ L QQLD ++S DS ES+EV +QC+E F + D A+
Sbjct: 1 MSNSERLSFA-IIEHLTQQLDSGTVSGDSAESLEVAIQCLEQVFNINRGDEAQ 52
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/65 (35%), Positives = 39/65 (60%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCT 491
+A + +GN+ +K E + EAL+ YT+ IE+ + + NRA H +L P+ A++DC
Sbjct: 863 KANDFREKGNDAVKREEFQEALDWYTKGIELTKTDHRLFSNRALCHLKLNKPKEALADCE 922
Query: 492 TALAL 506
+ L L
Sbjct: 923 SCLKL 927
>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +3
Query: 306 KAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSD 485
KA+A +LK++GN + A +A+E YT AI +DP N V+Y NR+AA +L A+ D
Sbjct: 6 KAKAAKLKDQGNAALSAGDTQKAIEFYTEAILLDPANHVFYSNRSAAFAKLSKYNEALED 65
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +3
Query: 303 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVS 482
N+ +A K GN K + ++ A + + A E++P N +Y N AAA F + E +
Sbjct: 226 NEKKAMEEKELGNAAYKKKDFDTAHKHFNNAKELNPDNMTFYTNNAAAFFEEGNYEECIK 285
Query: 483 DCTTAL 500
+C A+
Sbjct: 286 ECLEAV 291
Score = 37.9 bits (84), Expect = 0.008
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Frame = +3
Query: 258 LDLLQLVRQRLG--PPANKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYC 431
L+ L +RL P AE K +GNE K + A + YT AI+ +P +A Y
Sbjct: 347 LEKLMKEEERLAYIDPVKSAEE---KEKGNEYFKKGDFPSAQKHYTEAIKRNPEDAKLYS 403
Query: 432 NRAAAHFRLCDPEAAVSDCTTALALHLTIARRTDALGSR-SLPSRDTARRALPTPALLNS 608
NRAA +L A+ + L R A+ SR + +RA+ P +
Sbjct: 404 NRAATFQKLAAFNLALEEAKEGL--------RAVAMASRPPTDPEEVKQRAMADPEIQAF 455
Query: 609 T-LRTSPTEKTSNSLTKP 659
T R S +N + P
Sbjct: 456 TKSRNSRQNSKANGMRDP 473
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 509 PDYSKAYGRLGLALTALERHCEXXXXXXXXXQLDPENESYRENLQLADQTLAQR 670
PD+ K Y RLG A + L+ + + + DP N + L+ AQ+
Sbjct: 74 PDWGKGYSRLGTAYSFLKMYQKAEEAFTTGLRHDPNNAQLKSGLEEVQSNAAQQ 127
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +3
Query: 327 KNEGNELMKAERYNEALEKYTRAIEIDPR----NAVYYCNRAAAHFRLCDPEAAVSDCTT 494
K EGN+ Y +A E YT A+EIDP+ NA Y NRA +L + A+ DCT
Sbjct: 37 KQEGNDAFTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRAVVGSKLGKNDQAIEDCTQ 96
Query: 495 ALALHLTIAR 524
A+ L T +
Sbjct: 97 AMNLDHTYTK 106
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +3
Query: 327 KNEGNELMKAERYNEALEKYTRAIEIDPR----NAVYYCNRAAAHFRLCDPEAAVSDCTT 494
K EGN+ Y +A E YT A+EIDP+ NA Y NRA +L + A+ DCT
Sbjct: 37 KQEGNDAFTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRAVVGSKLGKNDQAIEDCTQ 96
Query: 495 ALALHLTIAR 524
A+ L T +
Sbjct: 97 AMNLDHTYTK 106
>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Frame = +3
Query: 297 PANKAEAERLKNEGNELMKAERYNEALEKYTRAIEI-DPRN----AVYYCNRAAAHFRLC 461
P+ +A+ +LK GN+ K +Y +A++ YT AIE+ P N + +Y NRAAA+ ++
Sbjct: 137 PSEQAQVAKLK--GNKYFKGCKYEQAIKCYTEAIELCPPENKQDLSTFYQNRAAAYEQMN 194
Query: 462 DPEAAVSDCTTALALH 509
E V + T AL L+
Sbjct: 195 QFENVVEEATKALELN 210
>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLC---DPEAAVSD 485
A LK GNE +++ A+ Y A+ + P +AV Y NRAAA + D AA+ D
Sbjct: 334 ALHLKTIGNEAFCKQQFLTAVNMYNEALNLAPNSAVLYANRAAAFIKRSWEGDVYAALRD 393
Query: 486 CTTALAL 506
C AL L
Sbjct: 394 CHKALTL 400
>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
Length = 1104
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYY--------CNRAAAHFRLCDPE 470
A R K+EG L K RY EA+EKY++AI++ ++ ++ NRA+ R+ D
Sbjct: 415 AVRAKDEGMRLYKIGRYAEAVEKYSQAIDVLWKDKSHFKSALASLLYNRASCLGRIGDAS 474
Query: 471 AAVSDCTTALAL 506
V DCT++L L
Sbjct: 475 GCVKDCTSSLNL 486
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAA 446
A R K++GN+ ++ Y E+L YTR+IE+ P A Y NRA A
Sbjct: 215 ANREKDKGNDAFRSGDYKESLVYYTRSIELKP-TAASYNNRAMA 257
>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
Length = 206
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTT 494
AE K EGN + Y A+ Y++AIE P A +Y NR+AA+ + + + A+ D
Sbjct: 34 AEAKKAEGNREYGLKNYVSAIALYSKAIEFAPHVATFYGNRSAAYMMISNYDKALEDALL 93
Query: 495 ALAL 506
++ +
Sbjct: 94 SIEI 97
>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
Length = 455
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Frame = +3
Query: 303 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRN----------AVYYCNRAAAHF 452
N A +K EGN+ KA Y AL Y A+++ N AV Y NRAA
Sbjct: 5 NPKSAVEIKEEGNKYFKAGDYEAALSSYAAALKLYSGNEKDKEKQKEKAVIYKNRAACQL 64
Query: 453 RLCDPEAAVSDCTTAL 500
+L EAA+ D T AL
Sbjct: 65 KLEKYEAAIKDATKAL 80
>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +3
Query: 306 KAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRA 440
+A A +LK +GN K ++Y EA++ YT+A+ D N +Y NRA
Sbjct: 117 EAVALQLKEKGNLAFKQQKYEEAVKLYTQALNQDRTNTAFYTNRA 161
>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
Length = 458
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCT 491
++ ++ GNE+ Y A+E +T+AI++D R+ ++ NR+ RL E A+ D
Sbjct: 268 QSRQIAVRGNEMANLGNYQAAIELFTQAIKLDARDFRFFGNRSYCFDRLGQFEKALQDAD 327
Query: 492 TALAL 506
A++L
Sbjct: 328 VAISL 332
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +3
Query: 318 ERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTA 497
E+ K G+ K + + +A+E Y+ AI++DP N V Y NR+AA R E A+ D A
Sbjct: 24 EKAKWAGDACSKGD-FQKAVELYSEAIKLDPNNHVLYGNRSAACIRTWQLEQALEDGKKA 82
Query: 498 LALH 509
L+
Sbjct: 83 AELN 86
>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCT 491
EAE LK + N K YN A+ YT+AIE+ YY NR+ + + A++D
Sbjct: 186 EAEDLKLKANGYFKEGNYNSAITFYTQAIELKADVPAYYGNRSFCYLKTEYYGLALADAN 245
Query: 492 TALAL 506
A+ L
Sbjct: 246 KAIQL 250
>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 592
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +3
Query: 333 EGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTAL 500
EG+ L K E Y +AL+ Y+ A+E+ P + R+ + +L +AA D AL
Sbjct: 22 EGDVLFKQEEYQKALDSYSLALELKPTDPFCLVARSKCYLKLGKNDAAYRDAEAAL 77
>SB_42258| Best HMM Match : TPR_2 (HMM E-Value=0.006)
Length = 154
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +3
Query: 297 PANKAEAERLKNEGNELMKAERYN----EALEKYTRAIEIDPRNAVYYCNRAAAHFRLCD 464
PA++A RL NE E Y+ E+++ T AI +PR YY +RA A + + D
Sbjct: 24 PASQAIRSRLSIVFNEFGILEYYDRHYLESIDYLTTAISYNPRIGPYYLSRARARYMIED 83
Query: 465 PEAAVSDCTTALALHLTIARRTDALGSRSLPSR 563
+ A D L L ++ ++ SR P R
Sbjct: 84 SDGAREDVLKCLYLE-PDSKEVVSIFSRLFPGR 115
>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
Length = 1021
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 369 EALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALALHLTIAR 524
+AL+ Y + + P+++ YC RA + EAA+SD TAL + AR
Sbjct: 384 QALDVYNDVVRLRPKSSRSYCARAVCYLNSGSNEAALSDYNTALGIQPGCAR 435
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 372 ALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTA 497
AL Y A+ I P A C R AHF + + ++D +A
Sbjct: 419 ALSDYNTALGIQPGCARSLCGRMRAHFAIGQQDKGIADLISA 460
>SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)
Length = 452
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 327 KNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALAL 506
++EGN+ M ++ Y A++ Y ++I P N +C RA A L E ++ D + L
Sbjct: 288 RSEGNKKMISKEYRTAIDLYNKSILASPINYFSWCQRATAFISLNKYEESLLDFEECIKL 347
Query: 507 H 509
+
Sbjct: 348 N 348
>SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 868
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTT 494
+E K +GN+ +Y A+ YT AI P N + Y NRA ++ + D ++D
Sbjct: 500 SEDRKLQGNDHFNHGKYKAAISAYTLAISGAPYNHILYGNRAQSYLKSEDLREGLTDGRR 559
Query: 495 ALAL 506
A+ L
Sbjct: 560 AVVL 563
>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
Length = 357
Score = 35.5 bits (78), Expect = 0.044
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +3
Query: 303 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRN-----AVYYCNRAAAHFRLCDP 467
+ + A L+NEGN + + ALE YT++I + P ++ Y NR+A F + +
Sbjct: 63 SSSTAASLRNEGNTYFQKRQLGRALEVYTQSILVAPSTDLKVLSLAYANRSAVLFHMKEY 122
Query: 468 EAAVSD 485
E + D
Sbjct: 123 ELCLRD 128
>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 927
Score = 35.1 bits (77), Expect = 0.058
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTT 494
A+ N GN L + + A++ Y+RAI+I+P A + N A+ H + A+ T
Sbjct: 398 ADAFSNMGNLLKEMQDIQGAIQCYSRAIQINPAFADAHSNLASVHKDSGNIPEAIQSYRT 457
Query: 495 ALAL 506
AL L
Sbjct: 458 ALKL 461
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/66 (34%), Positives = 29/66 (43%)
Frame = +3
Query: 303 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVS 482
N AE N GN + + +AL Y A+++ P Y N AAA D E AV
Sbjct: 111 NPMLAEAYSNLGNVFKERGQLKDALANYRHAVKLKPDFIDGYINLAAALVAAGDLEGAVH 170
Query: 483 DCTTAL 500
TAL
Sbjct: 171 AYATAL 176
>SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)
Length = 304
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 327 KNEGNELMKAERYNEALEKYTRAIEIDPR----NAVYYCNRAAAHFRL 458
K EGN K + + +A++ YT I++ + NA+ Y NRA +F L
Sbjct: 88 KEEGNYEYKRKNFKKAIDAYTEGIKLRCQDGHVNAILYTNRATVNFSL 135
>SB_17634| Best HMM Match : TPR_2 (HMM E-Value=0.06)
Length = 118
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAI 398
+A LK EGN K + Y EA++KY RA+
Sbjct: 31 QAFSLKEEGNGCFKQKNYREAMKKYHRAM 59
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 351 KAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALAL 506
K E++N A + +A+ I+P ++V YC+ + EAA++ A+ +
Sbjct: 1447 KQEKFNLAEVHFRKALSINPSSSVLYCHVGVVQHAMRKSEAALATINKAMLI 1498
>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
Length = 372
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 285 RLGPPANKAEAERLKNEGNELMKAERYNEALEKYTRAI 398
++ P A + K EGNEL +Y +A EKY A+
Sbjct: 211 QMDPKEKLAAIPKYKEEGNELYVDGKYKDAAEKYAEAL 248
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 513 TIARRTDALGSRSL-PSRDTARRALPTPALLN-STLRTSPTEKTSNSLTKP 659
T+ RR ++SL P + R PTP +T++ PTE+ + TKP
Sbjct: 139 TVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKP 189
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 303 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRN 416
+K + L G L+ + Y ++ E +T+ +E+DP+N
Sbjct: 1048 DKENIKALFRRGKALLNLKDYEKSKEDFTQVLELDPKN 1085
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 300 ANKAEAERLKNEGNELMKAERYN--EALEKYTRAIEIDPRNAVYYCN 434
A++ E+ RL+ GN L+ + ++ E LEKY A +++PR+ + N
Sbjct: 160 ASELESARLRICGNLLLNNDEFSKDEILEKYKEAEKLNPRDHLLQSN 206
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 315 AERLKNEGNELMKAERYNEALEKYTRAI 398
AE+LK GNE K ++Y A +KY +A+
Sbjct: 300 AEKLKVIGNEQFKQQKYEVAKKKYKKAL 327
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 426 YCNRAAAHFRLCDPEAAVSDCTTALALHLTIARRTDALGSRSLPSRDTARRALPT 590
Y N AA +L + +A+ DC AL L A+ G + +D L T
Sbjct: 370 YLNSAACKLKLAEYPSAIEDCNEALKLDANSAKALFRRGQANEHMKDYEEAMLQT 424
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 219 DRFRADDGRCGSGLDLLQLVRQRLGPPANKAEAERLKNEG-NELMKAERYNEALEKYTRA 395
+ RA+ + ++ Q+ + L A A + NE N+LMK E N L++ +A
Sbjct: 432 EELRAEGDKASQLVECFQVNLRDL--EATNASLQETVNESTNKLMKMEEQNTRLQEQIKA 489
Query: 396 IEIDPRNAV 422
+E++ N V
Sbjct: 490 VEVERVNLV 498
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 522 RRTDALGSRSLPSRDTARRALPTPALLNSTLRTSPTEKTSNSLT 653
R D G +PS+DT RR + + +TSPT++ + T
Sbjct: 444 RSKDKKGPSKVPSKDTRRRPTSSGKIAPPPRQTSPTKQATKKTT 487
>SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 303 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEI 404
N+ ERL + L+KAE+Y E +K A+E+
Sbjct: 166 NEKTLERLFTKAGNLVKAEKYKELAKKRAHAMEM 199
>SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEI------DPRNAVYYCNRAAAHFRLCDPEA 473
+A+ +GNEL ++ EALE+Y +A+++ + A N RL + E
Sbjct: 11 QAQVYFRKGNELYNLGKHREALEQYQQALQVYESTGNESDQADVRQNIGVVQDRLGNYEE 70
Query: 474 AVSDCTTALALHLTIARRTDALGSR 548
A+ AL +H++ G R
Sbjct: 71 AMKYYQQALRVHISTGNEFKQAGVR 95
>SB_49426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 249 RIFRRQLESGLNALHADFDTLSRIRAQR 166
R+ RQL + ++ +H D D +S +R R
Sbjct: 246 RVLNRQLTAQIDKIHGDIDAISELRMPR 273
>SB_20703| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 693
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEI 404
+A+ +GNEL ++ EALE+Y +A+++
Sbjct: 11 QAQVYLRKGNELYDLGKHREALEQYQQALQV 41
>SB_14077| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 357
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEI 404
+A+ +GNEL ++ EALE+Y +A+++
Sbjct: 11 QAQVYLRKGNELYDLGKHREALEQYQQALQV 41
>SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 399 EIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTT-ALALHLTIARRTDALGSRSLP 557
E D + + ++C+ A H R+ +AA +D + L L L++ R+ +G S P
Sbjct: 81 EYDSKTS-FHCDNAQGHHRMSKKQAAQNDAQSFPLILWLSVVRQNCHVGQSSDP 133
>SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEI 404
+A+ +GNEL ++ EALE+Y +A+++
Sbjct: 11 QAQVYLRKGNELYDLGKHREALEQYQQALQV 41
>SB_51634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 501 ALHLTIARRTDALGSRSLP----SRDTARRALPTPALLNSTLRTSPTEKTSNSLT 653
A H T+A + R+LP R T RR LP P + T+R + TS S T
Sbjct: 88 ATHATVAASRNFTLRRALPWPPSQRFTMRRTLPWPPSQSFTIRRALPWPTSQSFT 142
>SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10)
Length = 466
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 336 GNELMKAERYNEALEKYTRAIEIDPRN 416
G +E Y EAL+ Y A++IDP N
Sbjct: 421 GTAAYHSEEYVEALKDYESALKIDPNN 447
>SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10)
Length = 476
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 303 NKAEAERLKNEG-NELMKAERYNEALEKYTRAIEIDPRNAVYYCN 434
+K + K G N+ + E+L+ Y+ A+ P+ YYCN
Sbjct: 378 DKTQIANSKERGKNQRPCQDSIMESLDPYSGALSTGPQGQAYYCN 422
>SB_21748| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 373
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 312 EAERLKNEGNELMKAERYNEALEKYTRAIEI 404
+A+ +GNEL ++ EALE+Y +A+++
Sbjct: 11 QAQVYFRKGNELYDLGKHREALEQYQQALQV 41
>SB_40987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 417 AVYYCNRAAAHFRLCDPEAAVSDCTT-ALALHLTIARRTDALGSRSLPSRDTARRALPTP 593
A+ Y N ++C PE CTT L L + I R+T+ S S D P P
Sbjct: 10 AIGYNNILDFTIQICSPERNFDLCTTILLILSINIERKTEDTTSNSCSPGDPLVLERPPP 69
>SB_26625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 330 NEGNELMKAERYNEALEKYTR 392
NE L + ER+N+ALEKY R
Sbjct: 407 NESPALSEKERHNKALEKYKR 427
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/66 (24%), Positives = 26/66 (39%)
Frame = +1
Query: 85 LKIEMSNEIKIVAASIVNFLKQQLDGDSLSPDSRESVEVGVQCIETAFELTTEDAARAWT 264
+K ++ + ++ +V SLS V+ V C F +T + A A T
Sbjct: 2261 VKFRLAEQTELGGNRVVKVEAYDQGSPSLSSQVSVIVQTSVSCEAMVFSITEDGAISAKT 2320
Query: 265 YCSLSV 282
CS V
Sbjct: 2321 ICSFDV 2326
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,097,434
Number of Sequences: 59808
Number of extensions: 381503
Number of successful extensions: 1398
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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