Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00271
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.0  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   9.0  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   9.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.0  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.0  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   9.0  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   9.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.0  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 252 SRIFRRQLESGLNALHADFDTLS 184
           SRI   ++ S LNA+++ FDTL+
Sbjct: 438 SRITPMEVVSMLNAMYSLFDTLT 460



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 541 PKASVRLAIVRCRASAVVQSLTAASGSHSLKCAAA 437
           P+   R AIV   ASA   S T++  S   K   +
Sbjct: 737 PRVENRSAIVHSEASANANSSTSSEESREEKATTS 771


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 294 PPANKAEAERLKNEGNELMKAERYNEA 374
           PP ++A  E +K E +  +K   YN A
Sbjct: 160 PPYSEARFEEIKKEVSSYIKKIGYNTA 186


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 314 SRTTQERRQRAHES*ALQRSA*KVHAR 394
           SRT +ER Q   E+  +Q+   + H R
Sbjct: 29  SRTKEERLQHRREAWLIQQEREREHQR 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,739
Number of Sequences: 438
Number of extensions: 3088
Number of successful extensions: 40
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)