Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00269
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0153 + 15179064-15179210,15179598-15179668,15179831-151800...    27   4.6  
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378...    27   4.6  
07_03_0105 + 13455906-13457198                                         26   6.1  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    26   6.1  
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930...    26   8.0  

>09_04_0153 +
           15179064-15179210,15179598-15179668,15179831-15180017,
           15180107-15180298
          Length = 198

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -3

Query: 317 RLIEKNGREKLA--VPTPPSGIRGEKE 243
           RL+ + G+++LA   P PP+  RGE++
Sbjct: 9   RLVRRKGKKRLAPPPPPPPAAERGERD 35


>03_06_0591 +
           34936583-34936674,34937631-34937640,34937716-34937831,
           34938249-34938261,34939924-34939977,34940020-34940170,
           34940619-34940647
          Length = 154

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 232 STSSSFSPLIPLGGVGTANFSLP 300
           STSSS SPL+PL  + T    LP
Sbjct: 5   STSSSMSPLVPLLSICTTLARLP 27


>07_03_0105 + 13455906-13457198
          Length = 430

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 253 PLIPLGGVGTANFSLPFFSINRH 321
           PL+   G G A FS P+ +I RH
Sbjct: 242 PLVAGAGAGAAAFSTPYDTIARH 264


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 168 VFQIMSNVFLISLIK*ILYCLVYLFFFFSPYPTRWGWHS*FFSS 299
           V+  M  VFLI +I  I   +V  +F  +     W W S FFS+
Sbjct: 475 VYGFMLLVFLILIIVTICVTIVGTYFLLNAENYHWQWTS-FFSA 517


>06_03_0223 -
           18391177-18391287,18391570-18392081,18392200-18393019,
           18393603-18393671,18393973-18394062,18395381-18395575
          Length = 598

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 117 ETTAYNL*CNYRYIK*TVFQIMSNVFL 197
           E   YNL C YR I   +  IM N++L
Sbjct: 74  EQLLYNLLCFYRVIVIVIIDIMVNIWL 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,453,080
Number of Sequences: 37544
Number of extensions: 91716
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)