Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00269
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00051-9|AAM29693.1|  503|Caenorhabditis elegans Aldehyde dehydr...    27   3.2  
U00051-8|AAA91356.1|  687|Caenorhabditis elegans Aldehyde dehydr...    27   3.2  
U00033-8|AAC48294.1|  315|Caenorhabditis elegans Hypothetical pr...    26   5.6  

>U00051-9|AAM29693.1|  503|Caenorhabditis elegans Aldehyde
           dehydrogenase protein11, isoform b protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 232 STSSSFSPLIPLGGVGTANF 291
           +T +  SPL+P GGVG + F
Sbjct: 455 NTYNDVSPLVPFGGVGESGF 474


>U00051-8|AAA91356.1|  687|Caenorhabditis elegans Aldehyde
           dehydrogenase protein11, isoform a protein.
          Length = 687

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 232 STSSSFSPLIPLGGVGTANF 291
           +T +  SPL+P GGVG + F
Sbjct: 639 NTYNDVSPLVPFGGVGESGF 658


>U00033-8|AAC48294.1|  315|Caenorhabditis elegans Hypothetical
           protein F37C12.2 protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 177 IMSNVFLISLIK*ILYCLVYLFFFFSPYPTRW 272
           I SN+F+ S+I    + L++ FF  + YP  W
Sbjct: 242 ISSNMFVNSVI----FALLFPFFIITSYPANW 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,115,788
Number of Sequences: 27780
Number of extensions: 99429
Number of successful extensions: 200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)