Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00269
         (328 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06850.1 68418.m00774 C2 domain-containing protein contains I...    27   2.2  
At5g27640.1 68418.m03311 eukaryotic translation initiation facto...    27   3.9  
At5g65687.1 68418.m08267 transporter-related low similarity to s...    26   5.2  
At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase, puta...    25   9.0  
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    25   9.0  

>At5g06850.1 68418.m00774 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 669

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -2

Query: 204 MKLEIRYS*FETQSILYIYSYITDCKLWFQHEFSINQL 91
           ++L +R++      ++Y+Y +    K+ + H F++NQL
Sbjct: 383 VQLAVRFTCLSLAHMIYLYGHPLLPKMHYLHPFTVNQL 420


>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
           subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
           to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
           subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
           thaliana}
          Length = 712

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 278 PTPPSGIRGEKEEEVD*TIK 219
           P PPS +  EKEEE+  T+K
Sbjct: 606 PRPPSFLTAEKEEEIAKTLK 625


>At5g65687.1 68418.m08267 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003976,  GI:12003972, GI:12003974,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 492

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 155 ISIVTLQIVSCGFSMNFRLIS 93
           +++ T+ ++ CGFS NF +I+
Sbjct: 117 LTVWTIAVIGCGFSYNFWMIA 137


>At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase [Phaseolus
           vulgaris][GI:6715257]; neoxanthin cleavage enzyme,
           Lycopersicon esculentum, PATX:E325797
          Length = 595

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 262 PLGGVGTANFSLPFFS 309
           P+ G+G AN SL FFS
Sbjct: 230 PVNGIGLANTSLAFFS 245


>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 208 INEIRNTLLII*NTVYF 158
           I EIRN+ LI+ N VYF
Sbjct: 159 IKEIRNSTLILANAVYF 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,537,489
Number of Sequences: 28952
Number of extensions: 85591
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)