Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00267
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    27   1.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   7.0  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   7.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.3  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.3  

>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/57 (19%), Positives = 29/57 (50%)
 Frame = +1

Query: 148 SYCDHWFSFVIPYSFLSYTTSIIFEDHVTRVYHVTMDIVIQAVVSLFAVMWGVLNVA 318
           S+ + W +  + Y+  ++  +I        VYH++  ++ ++   ++  +W +LN A
Sbjct: 85  SWWEAWITVWVGYTIAAFILTIA--GRAGAVYHISFPVLSRSSFGIWGSLWPILNRA 139


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 77  FITSCILFILSCY*SVHNMASFHKVIVIIGFLSLFHTAFSATQHRS 214
           +  SC+LFI+S Y     + S    +V   F+ L H+  +  + +S
Sbjct: 455 YFVSCLLFIISAYFLTLWLMSLVIAVVTSSFIDLQHSGKNQKEQKS 500


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 77  FITSCILFILSCY*SVHNMASFHKV 151
           F+  C L+IL C  +V  ++S HK+
Sbjct: 57  FLAKCFLYILRCMSTVSLLSSAHKM 81


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 217 FEDHVTRVYHVTMDIVIQAVVSLFAVMWGVLNVAGN 324
           F D  T  Y+  + I +  + +LF   W   N+A N
Sbjct: 192 FRDFDTMFYNNLLSIPVLVICTLFTEDWSAENIAQN 227


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 318 RHIQHSPHDSKQTDHSLDDNIHGNVVNSCDVILK 217
           +HI + P D +  + SLDD    ++ ++ D IL+
Sbjct: 164 KHITYKPKDEEFWNFSLDDMAMFDIPDTVDYILR 197


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 367  WETQNNLPSFYIFNHRGKALSYDYVPT 447
            WE+  N+P+FY    R K + + +V T
Sbjct: 2127 WESPGNIPAFYTALLRRKLVLWFFVAT 2153


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 395 NEGRLFCVSHLIAFNSAAAGISRRLPATFNTPHMTANRLTTAWMTISMVT 246
           N G  F V     F  +  G+S+R  AT  TP    + +T+A  ++  ++
Sbjct: 184 NNGPNFPVEKATFFLESNMGLSQRAAATSTTPVCNISSVTSAINSVGEIS 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,328
Number of Sequences: 5004
Number of extensions: 49590
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)