Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00267
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0802 + 23313763-23313835,23314100-23314152,23314651-233147...    37   0.012
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672...    33   0.15 
10_05_0062 + 8694431-8694877                                           29   4.1  

>12_02_0802 +
           23313763-23313835,23314100-23314152,23314651-23314751,
           23315970-23316063
          Length = 106

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 23/61 (37%), Positives = 31/61 (50%)
 Frame = +1

Query: 253 MDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKWETQNNLPSFYIFNHRGKALSY 432
           MD+++Q ++ L   MW  L V      +   +E N I      NL  F IFNHRG+AL  
Sbjct: 41  MDVMMQLLLGLALCMWAGLAVPAKFLSVLPHSEENRIV-SLPANL-DFMIFNHRGRALPS 98

Query: 433 D 435
           D
Sbjct: 99  D 99



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +2

Query: 149 VIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPWILSSKLWSVCLLSCGEC*MW 316
           V+ ++G   L H A++  Q+R+ L+IT +EF++ P  +  +L    LL    C MW
Sbjct: 6   VLGVLGGALLAHAAYATIQYRAVLKITEEEFSSPPMDVMMQL----LLGLALC-MW 56


>03_02_0803 +
           11365959-11366390,11366470-11366502,11367158-11367214,
           11367784-11367945,11367987-11368139,11368218-11368295,
           11368377-11368469,11368981-11369071,11369091-11369209
          Length = 405

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 521 FCICYILKIV-KFCHIQQIVNDNDVMLFGNITVTVKALER 637
           F +C+IL ++ K CH+  +  +N V+L   ITV +  L R
Sbjct: 205 FKVCFILLVMEKMCHVCNLYPNNKVLLLDEITVDLDVLAR 244


>10_05_0062 + 8694431-8694877
          Length = 148

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 347 AAAGISRRLPATFNTPHMTANRLTTAWMTISMVTW 243
           AAA  +  LPAT     M A  ++  WM ++M  W
Sbjct: 110 AAATAAPLLPATATAAPMQAVTVSVVWMCLAMAAW 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,158,339
Number of Sequences: 37544
Number of extensions: 290876
Number of successful extensions: 679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)