Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00267
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)                  29   3.2  
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 28   7.4  
SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   7.4  
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
          Length = 358

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 36  ETLMQHCIAVFVNNLLQVAFYSF*VVIRVYITWLHFIKLL 155
           E +   C+  F NN LQV FY F +V R    W+++  L+
Sbjct: 258 EGITSGCLT-FSNNFLQVIFYIFPMVPRFGTWWINWAALI 296


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 320 PATFNTPHMTANRLTTAWMTISMVT 246
           P+ +NTP  T +R  T W T S VT
Sbjct: 657 PSRYNTPWPTPSRYNTPWSTPSRVT 681


>SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 174 RYSIQLSQLHNIDHI*GSRHKSLPRYHGYCHPSCGQS 284
           RY  QLS L+      G+ + SLP + G+ +P  GQS
Sbjct: 735 RYWQQLSLLYKNRMQIGNANLSLPAHQGFVNPMAGQS 771


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 243 PRYHGYCHPSCGQSVCCHVGSVECGG*SSRNTSC-C*IKCYQMGD 374
           P+ H   HP C  +  C    V+C   +S   SC C   C   GD
Sbjct: 149 PQVHHMIHPRCHGTNSCRGKCVDCMQVASERYSCMCDRYCRYFGD 193


>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1846

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -1

Query: 351  FSSSWYFAKITRHIQHSPHDSKQTDH 274
            ++  WY     R I+H+P+++   D+
Sbjct: 1540 YAKEWYVGNFVRRIRHNPYETSSMDY 1565


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -1

Query: 618  VTVILPNNITSLSLTICWIWQNLTIFKM*QMQNVQNYLF*NFLYS 484
            VTVI    I+SLS+ IC  + N ++  + Q+  +QN LF   +Y+
Sbjct: 965  VTVIFI--ISSLSIVICRFFSNNSVRPILQLLIIQNSLFNPLVYT 1007


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,270,842
Number of Sequences: 59808
Number of extensions: 351405
Number of successful extensions: 902
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)