Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00267
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    49   3e-06
AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical ...    29   3.7  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +2

Query: 134 ASFHKVIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLP 253
           ++ +++I I+  LSL H A+SA QHR YLR+T Q F  LP
Sbjct: 3   STIYRLITIVSLLSLLHCAYSAAQHRFYLRLTEQPFINLP 42


>AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical
           protein H01M10.1 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 321 TRHIQHSPHDSKQTDHSLDDNIHGNVVNSCDVILKYD 211
           T HI+H  + + + +  LDD  HG+V  +C VI   D
Sbjct: 102 TIHIKHYYNFNSRAEFHLDDIRHGHVRRNCRVIKAKD 138


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 246 RYHGYCHPSCGQS--VCCHVGSVECGG*SSRNTS 341
           RY   CH S   +  +CCH  + +CG  SS   S
Sbjct: 52  RYGAICHYSSNYNNYLCCHSQNTQCGTNSSPQVS 85


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 237  SLPRYHGYCHPSCGQSVCCHVGSVECGG*SSRNTSCC*IKCYQMGDT 377
            S P   G C     + VC    +  C G SSR+ +C    CY   D+
Sbjct: 918  SCPTTCGSCSTVTQKRVCMSPSTCPCQGVSSRSVNCGITVCYFPDDS 964


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,868,185
Number of Sequences: 27780
Number of extensions: 282374
Number of successful extensions: 827
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)