Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00267
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03345.1 68418.m00287 expressed protein                             34   0.070
At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR...    28   4.6  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    27   8.0  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    27   8.0  
At3g24660.1 68416.m03096 leucine-rich repeat transmembrane prote...    27   8.0  
At1g03230.1 68414.m00301 extracellular dermal glycoprotein, puta...    27   8.0  

>At5g03345.1 68418.m00287 expressed protein
          Length = 104

 Score = 34.3 bits (75), Expect = 0.070
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 184 YSFLSYTTSI-IFEDHVTRVYHVTMDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNA 360
           YS + Y   + I E+  +R     ++++++ ++ L   MW  L   G    I   ++ N 
Sbjct: 20  YSTIQYRGLLKIMEEEFSRP---PINVILELIIGLALCMWAALTFPGKFLSIHPDSDENR 76

Query: 361 IKWETQNNLPSFYIFNHRGK 420
             +   N+   F IFNHRG+
Sbjct: 77  AVFLPDNS--DFMIFNHRGR 94



 Score = 31.5 bits (68), Expect = 0.49
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 149 VIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLP 253
           ++ + G L L H A+S  Q+R  L+I  +EF+  P
Sbjct: 6   LVGVFGVLILSHAAYSTIQYRGLLKIMEEEFSRPP 40


>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1607

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 536  ILKIVKFCHIQQIVNDNDVMLFGNI 610
            +LK+VK CH QQ+   +D++   NI
Sbjct: 1033 MLKVVKLCHSQQLTAIDDILKAQNI 1057


>At5g45050.2 68418.m05524 disease resistance protein-related similar
           to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
           profiles PF03106: WRKY DNA -binding domain, PF00931:
           NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 536 ILKIVKFCHIQQIVNDNDVMLFGNITV 616
           +LK ++ CH QQ+V+ +D++   N+ V
Sbjct: 593 MLKTIRLCHSQQLVDIDDLLKAQNLEV 619


>At5g45050.1 68418.m05523 disease resistance protein-related similar
           to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
           profiles PF03106: WRKY DNA -binding domain, PF00931:
           NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 536 ILKIVKFCHIQQIVNDNDVMLFGNITV 616
           +LK ++ CH QQ+V+ +D++   N+ V
Sbjct: 593 MLKTIRLCHSQQLVDIDDLLKAQNLEV 619


>At3g24660.1 68416.m03096 leucine-rich repeat transmembrane protein
           kinase, putative identical to putative kinase-like
           protein TMKL1 precursor GB:P33543 from [Arabidopsis
           thaliana], (Plant Mol. Biol. 23 (2), 415-421 (1993))
          Length = 674

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 334 IPAAAELNAIKWETQNNLPSFYIFNHRGKALSYDYVPTPTKADL 465
           +P   +L  I+ E    L +FY      K L YDY+P  +  DL
Sbjct: 415 LPVIRQLGRIRHENLVPLRAFYQGKRGEKLLIYDYLPNISLHDL 458


>At1g03230.1 68414.m00301 extracellular dermal glycoprotein,
           putative / EDGP, putative similar to extracellular
           dermal glycoprotein EDGP precursor [Daucus carota]
           GI:285741
          Length = 434

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 258 YCHPSCGQSVCCHVGSVECG 317
           Y  P C  +VC   GS+ CG
Sbjct: 82  YRSPRCNSAVCSRAGSIACG 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,684,053
Number of Sequences: 28952
Number of extensions: 247194
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)