Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00266
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           32   0.59 
SB_58175| Best HMM Match : Arm (HMM E-Value=0)                         29   4.1  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              28   7.2  
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              28   9.5  

>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 96  TQRSIRSPANFQGQSDTLAIFTTLSLGTGKWGEGRSSGLWERATKDFLVKVVI 254
           T+ +  +PA   G   ++   TTL+L      + RSSG +  A+  FL K+V+
Sbjct: 434 TRSATYAPAIMSGCGTSIMFVTTLALAAELVDQDRSSGAFVMASMSFLSKIVL 486


>SB_58175| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1472

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 83   MPPGYAEKYPITSQFSRSVRHPRDIHD 163
            +PPG   + P T+Q   SVRH R + D
Sbjct: 1368 LPPGERRRRPHTTQSLPSVRHARSVRD 1394


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 68  NAQVSMPPGYAEKYPITSQFSRSVRHPRDI 157
           NA +S PP Y  +  + ++F  +  HPR I
Sbjct: 264 NAFISYPPAYFTQRTLLARFQMNTSHPRKI 293


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 71  AQVSMPPGYAEKYPITSQFSRSVRHPRDIH 160
           AQ   P GY ++YP  SQ+S     P+  H
Sbjct: 597 AQGMYPQGYQQQYPGPSQYSMGYMAPQGYH 626


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,754,699
Number of Sequences: 59808
Number of extensions: 485975
Number of successful extensions: 1290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)