Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00266
         (769 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X83111-1|CAA58175.1|  859|Drosophila melanogaster Inscuteable pr...    29   7.0  
U73489-1|AAB18232.1|  767|Drosophila melanogaster Nem protein.         29   7.0  
AE013599-3072|AAF46626.1|  859|Drosophila melanogaster CG11312-P...    29   7.0  

>X83111-1|CAA58175.1|  859|Drosophila melanogaster Inscuteable
           protein.
          Length = 859

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 431 HQLPACG--ILVRTLTCQPADGL*GVRSRRPDVGLQAQITHEWYCQQH 568
           +QL +CG   +VR +    + G  G   RR  V L AQIT  W+  +H
Sbjct: 553 NQLGSCGGIEIVRDILQVESAGERGAIERREAVSLLAQITAAWHGSEH 600


>U73489-1|AAB18232.1|  767|Drosophila melanogaster Nem protein.
          Length = 767

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 431 HQLPACG--ILVRTLTCQPADGL*GVRSRRPDVGLQAQITHEWYCQQH 568
           +QL +CG   +VR +    + G  G   RR  V L AQIT  W+  +H
Sbjct: 554 NQLGSCGGIEIVRDILQVESAGERGAIERREAVSLLAQITAAWHGSEH 601


>AE013599-3072|AAF46626.1|  859|Drosophila melanogaster CG11312-PA
           protein.
          Length = 859

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 431 HQLPACG--ILVRTLTCQPADGL*GVRSRRPDVGLQAQITHEWYCQQH 568
           +QL +CG   +VR +    + G  G   RR  V L AQIT  W+  +H
Sbjct: 553 NQLGSCGGIEIVRDILQVESAGERGAIERREAVSLLAQITAAWHGSEH 600


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,083,351
Number of Sequences: 53049
Number of extensions: 717294
Number of successful extensions: 2231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2231
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)