Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00266
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32350.1 68417.m04605 expressed protein contains Pfam profile...    32   0.37 
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    30   2.0  
At2g11830.1 68415.m01271 hypothetical protein                          29   3.4  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   4.5  
At1g54120.1 68414.m06170 expressed protein                             29   4.5  
At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein ...    28   6.0  
At1g25230.1 68414.m03131 purple acid phosphatase family protein ...    28   6.0  
At3g03090.1 68416.m00305 sugar transporter family protein simila...    28   7.9  

>At4g32350.1 68417.m04605 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 732

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 67  ERSSFYASWLRREVSD-HQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 210
           ER  FY    +    + HQPIF    T        +LGQGNG R G+ D
Sbjct: 279 ERKEFYLHSKQNPAREKHQPIFNEGDTIVMKVNYGNLGQGNGHRPGVVD 327


>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
            domain-containing protein / F-box family protein similar
            to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
            pombe}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
 Frame = -1

Query: 379  WRSHWPSLDDHRNWYCRLQVLILWCRKPVRSVCRDHH*RTPCITTFTKKSLVA------L 218
            W   +  + D     C  +    WCR PV + CR H     C+   +++  ++       
Sbjct: 1031 WTEEYSFIQDSLIGGCNCKRCGEWCRLPVITPCR-HLLCLDCVALDSERCTISGCGYLYE 1089

Query: 217  SQSPEDL-----PSPHFPVPSDKV 161
             Q+PE L     P+P +PVP D +
Sbjct: 1090 MQTPETLARPENPNPKWPVPKDLI 1113


>At2g11830.1 68415.m01271 hypothetical protein
          Length = 156

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 701 YRTQINSYKSIDFYKNFFRQNFIHTSRLTRQECLSKR 591
           +  ++ SY+S+  +  +FR  F   S  TR +CL+K+
Sbjct: 110 FTAELASYRSLVCFFPYFRIRFFPRSSNTRADCLAKK 146


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 268 NDDRGKLTG--QAYGTRVLGPGGDSTSYGGR 354
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At1g54120.1 68414.m06170 expressed protein
          Length = 124

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 457 GKNTHLSAGGWSLRSSVKKA*CRFTGPDYSRVV 555
           GKN+ +S GG+SL+  V++   R+    Y RVV
Sbjct: 34  GKNSAVSRGGFSLKKMVRRMKLRWLKLHYVRVV 66


>At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 262

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 179 REMGGGKVFGTLGESDQGLFGKGGY 253
           REMGGG        +DQG FG  GY
Sbjct: 23  REMGGGDSLEAGTSTDQGAFGSLGY 47


>At1g25230.1 68414.m03131 purple acid phosphatase family protein
           contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase; similar to purple acid phosphatase
           (GI:20257479) [Arabidopsis thaliana]
          Length = 339

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 423 DRSISFRRVGSW*EHSLVSRRMVSKEFGQEG 515
           D SISF  +G W  H L ++  V+ + G+ G
Sbjct: 43  DGSISFLVIGDWGRHGLYNQSQVALQMGRIG 73


>At3g03090.1 68416.m00305 sugar transporter family protein similar
           to xylose permease [Bacillus megaterium]  GI:1924928;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 503

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 479 ADK*VFLPRSHTPEADASIPALPPICLFKSIAALAF 372
           A+K   L  +H+PE  + + A+PP  LF ++ AL F
Sbjct: 27  AEKEPLLKENHSPENYSVLAAIPPF-LFPALGALLF 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,827,658
Number of Sequences: 28952
Number of extensions: 335591
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)