Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00265
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    32   0.077
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    31   0.13 
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp...    29   0.72 
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    29   0.95 
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    27   2.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.0  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   8.8  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   8.8  

>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 32.3 bits (70), Expect = 0.077
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 281  MRTLYVNNSNVDSIQ-NRTFSGLNSLQILHLGNNKLKELKGYEFQQLNNLKELFLQNNLI 457
            +R LY++N+   ++     F G+  L+   L N +LKE+  Y    + NL+ L L +N I
Sbjct: 847  IRNLYLSNNTFVTLDCKHMFLGVRYLE---LANVQLKEVPKYIATSMPNLRVLDLSHNYI 903

Query: 458  SHIANISFLSL 490
            S I ++  L +
Sbjct: 904  SDIESLKPLQM 914


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 19/70 (27%), Positives = 37/70 (52%)
 Frame = +2

Query: 275 QKMRTLYVNNSNVDSIQNRTFSGLNSLQILHLGNNKLKELKGYEFQQLNNLKELFLQNNL 454
           QK+  L + ++ +   +N      + L+ L++ +N L    G E   L NL+ L + NN+
Sbjct: 192 QKLSLLSIQSNRITQFENLACLS-HCLRELYVSHNGLTSFSGIEV--LENLEILDVSNNM 248

Query: 455 ISHIANISFL 484
           I H++ ++ L
Sbjct: 249 IKHLSYLAGL 258


>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
           Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 88

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 130 TIHCGTQMLSIVRGNLQWKYHRKYPWMQQKCF*MAIIFGNCRSRVYRKTEDENTV 294
           TI CG +M +++     W+ H       Q C  +     NC    +RKT+ ENT+
Sbjct: 27  TIPCGQEMAALLGC---WQNHGGQTDTAQ-CANLVAALENCMKTTHRKTKSENTI 77


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 335 FSGLNSLQILHLGNNKLKELKGYEFQQLNNLKELFLQNNLISHIANISFLSLKP 496
           F  +  LQ L  GNN++  +     + L NLK L L  N +  IA++  L+  P
Sbjct: 59  FPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADLDPLASCP 112


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +2

Query: 281 MRTLYVNNSNVDSIQNRTFSGLNSLQILHLGNN-KLKELKGYEFQQLNNLKELFLQNNLI 457
           +  LY+  + +   +  +F  L  LQ L L NN  L    GY       +  L L +  +
Sbjct: 219 LEVLYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYAVDVFQGINNLNLSSTSL 278

Query: 458 SHIANI 475
           + +A +
Sbjct: 279 ADVAEL 284


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 308 NVDSIQNRTFSGLNSLQILHLGNNKLKELKGYEFQQLN-NLKELFLQN 448
           ++D  QN+ FS  N        N+  K+L+ Y+FQ  + +L E  LQN
Sbjct: 170 SLDVEQNKPFSISNEPVEQETENSSTKDLQVYDFQTASEHLPEQSLQN 217


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 594 LWSCKCRYLQELTAFLAENAQKIIDITDV 680
           LW+CK   L++   F +  ++KI++ TD+
Sbjct: 106 LWNCKLPSLKDEAEFYSLFSKKIVEETDL 134


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +3

Query: 69  CCDYDACDCEMTCPHNCTCYHDP 137
           CC  D C C    P  C  + +P
Sbjct: 747 CCSVDDCTCTHDAPEECLEWANP 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,253
Number of Sequences: 5004
Number of extensions: 61274
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)