Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00264
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    28   1.2  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   1.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    27   3.7  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.5  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   8.6  

>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +3

Query: 15  NVYFWIKIVSYNLHVNQKKCLFVLVTLY 98
           +V++ I++ + + +V ++ CLFVL TLY
Sbjct: 73  DVHYTIEVETEDPYVTKESCLFVLSTLY 100


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 271 LYIYIFCDISSCRWVSLSVGVVVYIHAF 354
           L+ Y F D+SS     LS+G+V Y H +
Sbjct: 426 LFNYSFSDLSSLTITRLSIGMVFYTHGW 453


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 25/84 (29%), Positives = 35/84 (41%)
 Frame = -1

Query: 365 ITSLKACMYTTTPTDNDTHRQELISQNIYMYNPIAI*RLVCLLRYIYILAYNFWLS*IEC 186
           +  LKA  Y+   T+ND H   L +  +     I + R V  L    +      +S IE 
Sbjct: 675 VVKLKASSYSNGDTENDIHMFLLDNFLLLCKIKIQMKRRVHKLHLRPLPLELLSISYIED 734

Query: 185 ARQRQWCPTSYSQALFDNVIQLTK 114
           +  R   P   S AL  N I +TK
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITK 758


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  YFWIKIVSYNLHVNQKKCLFVLVTLYY 101
           Y WI    YNL +NQ K  FVLV L++
Sbjct: 105 YKWIYRKDYNLCLNQ-KIAFVLVMLHF 130


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 418 LCENLNLVNIDSVDWNIS*FFFLVKA 495
           LCE LN  N+ S   N   FFF++ A
Sbjct: 104 LCEILNARNVISCSLNTQKFFFIIVA 129


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 542 FSFVKTTHLYNVRP*KALTKKKNYDI 465
           F F+K  +    RP +ALT+ K +DI
Sbjct: 465 FGFIKIANETMARPIRALTEAKGHDI 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,644
Number of Sequences: 5004
Number of extensions: 62315
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)