Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00264
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0432 + 21178662-21178798,21178973-21179033,21179260-211793...    32   0.42 
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069...    29   5.1  
08_02_0718 + 20382323-20385046                                         28   9.0  

>05_04_0432 +
           21178662-21178798,21178973-21179033,21179260-21179339,
           21179650-21179794,21180411-21180620,21180956-21181004,
           21181199-21181326
          Length = 269

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 411 HYIQWEINTLYIHDKYYIIKSVYVHNHTYR 322
           HY+ W  +   +HD+ Y  +  ++H HTYR
Sbjct: 234 HYLYWNWDPEELHDEQYQQRIAWIHWHTYR 263


>09_06_0242 -
           21806370-21806483,21806574-21806660,21806865-21806917,
           21806999-21807140,21807406-21807501,21808617-21808785,
           21808859-21808939,21809032-21809106,21810322-21810387,
           21811013-21811158,21811898-21812344
          Length = 491

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 735 GAGDVGVAP*NENRQPKWKLKSSRQKPLGQ*SVINVLC 622
           G GDV  A   E R P W+  + R K +G  S+  V+C
Sbjct: 108 GEGDVAAAAALEMRWPPWEGLAERYKLIGATSLAFVIC 145


>08_02_0718 + 20382323-20385046
          Length = 907

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 292 HKIYICIIPLPSNVWFAYYDI 230
           HK Y+    LPS +WFAY D+
Sbjct: 393 HKKYLPEFTLPSILWFAYSDL 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,695,708
Number of Sequences: 37544
Number of extensions: 334375
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)