Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00264
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   5.2  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                28   6.9  
SB_5420| Best HMM Match : Plasmodium_HRP (HMM E-Value=3.7)             28   6.9  
SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)               28   6.9  
SB_44421| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-29)          28   6.9  
SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)            28   9.1  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -3

Query: 384 LYIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGLPITIYLYIGL 214
           +YI+   Y     Y + +TY   +  T  Y+  Y+YV  + ++   + + +Y+YI L
Sbjct: 25  IYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVYVYVYIYIYL 81



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -3

Query: 384 LYIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGLPITIYLYI 220
           +YI+   YI   +Y++ +TY   +  T  Y   Y Y  ++ ++   + + +Y+Y+
Sbjct: 13  IYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYV 67



 Score = 31.5 bits (68), Expect = 0.74
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -3

Query: 384 LYIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGLPITIYLYI 220
           +YI+   YI   +Y + +TY   +  T  Y   Y Y  ++ ++   + + +Y+Y+
Sbjct: 15  IYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYV 69



 Score = 31.5 bits (68), Expect = 0.74
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 384 LYIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGLPITIYLYI 220
           +YI+   YI    Y + +TY   +  T  Y   Y YV  + ++   + + +Y+Y+
Sbjct: 19  IYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVYV 73



 Score = 31.1 bits (67), Expect = 0.98
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -3

Query: 384 LYIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGLPITIYLYI 220
           +YI+   Y     Y + +TY   +  T  Y   Y+YV  + ++   + + +Y+Y+
Sbjct: 21  IYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVYVYV 75



 Score = 31.1 bits (67), Expect = 0.98
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -3

Query: 408 YIQWEINTLYIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGLPITIY 229
           YI   I T Y +   Y     Y + +TY   +     Y+  Y+YV  + ++   + I IY
Sbjct: 22  YIYIYIYT-YTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVYVYVYIYIY 80

Query: 228 LYIGLQFL 205
           LY  + +L
Sbjct: 81  LYDSIAYL 88



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -3

Query: 384 LYIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGLPITIYLYI 220
           +YI+   YI   +Y++ +TY   +  T  Y   Y Y  ++ +    + + +Y+Y+
Sbjct: 11  IYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYV 65



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -3

Query: 387 TLYIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGLPITIYLYI 220
           T YI+   YI   +Y++ + Y   +  T  Y   Y Y  ++ +    + + +Y+Y+
Sbjct: 8   TFYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYV 63



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -3

Query: 384 LYIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGLPITIYLYI 220
           +YI+   YI    Y + +TY   +  T  Y   Y Y   + ++   + + +Y+Y+
Sbjct: 17  IYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYV 71


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 259  MAMGLYIYIFCDISSCRWVSLSVGVVVYIH 348
            M++  Y+++   + SCR+V +S+ +  Y+H
Sbjct: 930  MSLCRYVHVVMSLCSCRYVVMSMSLCRYVH 959


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 271 LYIYIFCDISSCRWVSLSVGVVVYIHAFNDVIL 369
           + +Y +CD+  CR+V LS+G  V +   + V++
Sbjct: 113 MLLYRYCDMLLCRYVVLSLGCYVVMLLCHHVVM 145


>SB_5420| Best HMM Match : Plasmodium_HRP (HMM E-Value=3.7)
          Length = 217

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 381 YIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHL 256
           Y H   Y  ++ Y H + Y +R P    +I KY  +  +CH+
Sbjct: 67  YCHINKYAERAPYCHINKYAERAP--YCHINKYAEIAPYCHI 106


>SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)
          Length = 376

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 322 TTTPTDRSLYHKIYICIIPLPSNVWFAYYD 233
           T  PTDRS+    Y+  IP+P    FA  D
Sbjct: 31  TDRPTDRSIDQCSYLVSIPVPGGACFASQD 60


>SB_44421| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-29)
          Length = 642

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 381 YIHDKYYIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHL 256
           Y H   Y  ++ Y H + Y +R P    +I KY  +  +CH+
Sbjct: 549 YCHINKYAERAPYCHINKYAERAP--YCHINKYAEIAPYCHI 588


>SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)
          Length = 476

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -3

Query: 363 YIIKSVYVHNHTYRQRHPPTGAYITKYIYV*SHCHLTFGL--PITIYL 226
           YI+    +H H  +    PT AYI  Y  V  H HL  G   P T Y+
Sbjct: 177 YIVTYYRLHRHLLQATSTPTTAYIDTYYSV--HRHLLQGTSSPTTGYI 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,332,177
Number of Sequences: 59808
Number of extensions: 423149
Number of successful extensions: 944
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)