Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00263
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.84 
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    28   1.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.4  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   7.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.8  

>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 397 LTLIPIXGFDAACPFFYLDLSYI-ITAFSLPSHI 495
           L + P  G D   PF YLD SY+  ++ S  SH+
Sbjct: 368 LVIYPDAGIDTYSPFIYLDSSYVPFSSGSSLSHV 401


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 411 WDKGKKKIFFMALVGRGEPMDFSNA 337
           +D+ K  +FF+A  G GEP D + A
Sbjct: 99  FDRSKLLVFFLATYGEGEPTDNAEA 123


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 284  SKRALTWKVSEKGREAAPEQLGVCSVEQELGVLGMT 177
            S+++L  KVSE+ +E A E+    SVE E  +L  T
Sbjct: 1577 SRKSLVQKVSERLQEQASEKDDKSSVESEHSILTST 1612


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 358 LSSAYKGHKKYLFLTLIPIXGFDAACPFFYLD--LSYIITAFSLPS 489
           +SS     + Y+FL L+P+    AAC     D  L+ + T+ SL S
Sbjct: 221 ISSPEFWERTYMFLELLPLQSITAACESILKDYLLNLVKTSESLSS 266


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 179 SYPRPLAPA---PPSKRQVVLGRPLFLFQTLSRSVLSL 283
           SYP P+ PA   PP    + +  P+  F T  +S+ +L
Sbjct: 455 SYPYPMFPAPFSPPRNAMMPIPAPMDQFSTFHQSMATL 492


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 94  YYPLLGCRARIKFFHLHRSWAVCSNSSH 177
           Y  LL     +   HLH    +CS SSH
Sbjct: 522 YLDLLARSGNVDLLHLHAYPVICSVSSH 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,905
Number of Sequences: 5004
Number of extensions: 58942
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)