Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00263
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594...    31   1.1  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    29   2.6  
03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592...    29   3.5  
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865...    29   4.6  
09_05_0002 - 20013435-20013655,20013740-20013914                       28   8.0  
08_02_0574 - 18867623-18868033,18869751-18870209                       28   8.0  

>08_02_0644 -
           19658270-19658626,19659142-19659218,19659256-19659430,
           19659543-19659596,19659691-19659858,19660756-19660953,
           19661546-19661632,19661739-19661827,19662499-19662955
          Length = 553

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 133 FHLHRSWAVCSNSSHVIPKTPSSCSTEQTPSCSGAASLPFSDTFQVSALFDL*IWRELNG 312
           FHLH +    S    ++P++ + C     P  +G  S+P + +  +S   DL + REL  
Sbjct: 114 FHLHSTRGTASGLE-LVPRSTNLCQPLDLPGSNGRESVPQARSLVLSNEDDLALERELMM 172

Query: 313 RKRP 324
             +P
Sbjct: 173 LNKP 176


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 163 SNSSHVIPKTPSSCSTEQTPSCSGAASLPFSDT 261
           S SS ++PK  S CS+      SG+    FSD+
Sbjct: 331 SESSKMLPKESSDCSSSSAERLSGSTLASFSDS 363


>03_02_0148 -
           5928703-5928931,5929099-5929171,5929288-5929408,
           5929907-5929952,5930361-5930571,5930837-5930986,
           5931122-5931179,5931285-5931400,5931986-5932091
          Length = 369

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 521 TLYSFIYII--IAKKRKTLLGTEDSWPLTA 604
           TL SFIY+   + K+R  + GT+ SW LTA
Sbjct: 146 TLGSFIYVPCEVMKQRMQVQGTKKSWALTA 175


>10_07_0124 -
           13085820-13085997,13086235-13086362,13086475-13086550,
           13086726-13086803,13086985-13087064,13087411-13087480,
           13087730-13087887,13088225-13088315,13088379-13088455,
           13088612-13088686,13088798-13089071,13089911-13090041,
           13090154-13090323,13090413-13090971,13091077-13091127
          Length = 731

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 130 FFHLHRSWAVCSNSSHVIPKTPSSCSTEQTPSCSGAAS 243
           F+ LH+  A  S+SS   P  PSS    +    SG AS
Sbjct: 19  FYVLHKGGAAASSSSSSAPSLPSSGRARRRIDVSGLAS 56


>09_05_0002 - 20013435-20013655,20013740-20013914
          Length = 131

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 184 PKTPSSCSTEQTPSCSGAASLPFSDTFQVSAL 279
           P   SS S ++T   +G AS+  SDT Q SAL
Sbjct: 18  PTKASSSSKKKTQHYTGGASVGASDTAQTSAL 49


>08_02_0574 - 18867623-18868033,18869751-18870209
          Length = 289

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 160 CSNSSHVIPKTPSSCSTEQTPSCSGAAS---LPFSDTFQVSALF 282
           C+ SS      P+S ST   P+C+G +S   LP +   Q SA F
Sbjct: 90  CAGSS-TTASAPTSTSTRAAPACTGRSSSTGLPSTSGHQGSAAF 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,662,201
Number of Sequences: 37544
Number of extensions: 376506
Number of successful extensions: 1205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)