Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00263
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 42 4e-04
SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 42 5e-04
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 40 0.001
SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 38 0.008
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05) 36 0.041
SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054
SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6) 29 3.6
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13) 29 4.7
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_23925| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 28 8.2
SB_21570| Best HMM Match : AT_hook (HMM E-Value=2) 28 8.2
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -1
Query: 284 SKRALTWKVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHPS 105
++++LTW K + P ++ + +G TW +LE+ AQ+R W+ L+ L P
Sbjct: 427 TRQSLTWNPQGKRKRGRPRNTWRRDLDADAKQMGKTWGQLERLAQNRDAWRELVGGLCPR 486
Query: 104 R 102
R
Sbjct: 487 R 487
>SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 290
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 275 ALTWKVSEKGREAAPEQLGVCSVEQELGVLGM-TWEELEQTAQDRCKWKNLIRALHPSR 102
ALTW + ++ P+ +VE+E G G W+E+ A DR KWK+ ++AL +R
Sbjct: 227 ALTWTPEGRRKQERPKTTWRRTVERERGEAGWRNWDEVRSKAADREKWKSTVKALCATR 285
>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 280
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = -1
Query: 281 KRALTWKVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHPSR 102
K + W K + P+ +++ EL +G+TW E + A+DR +W++ + AL P+R
Sbjct: 216 KTSALWTPIGKRKPGRPKTTWRRTIQAELLEMGLTWGEALKVAKDRQEWRHRVAALFPTR 275
>SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 275 ALTWKVSEKGREAAPEQLGVCSVEQELGVLGM-TWEELEQTAQDRCKWKNLIRALHPSR 102
ALTW + ++ P+ +VE+E G G W+E+ DR KWK ++AL +R
Sbjct: 193 ALTWTPEGRRKQGRPKTTWRRTVERERGEAGWRNWDEVRSKEADREKWKTTVKALCATR 251
>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 666
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = -1
Query: 281 KRALTWKVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHPSR 102
K + W K + P+ +++ EL +G+TW + + A+DR +W++ + AL P+R
Sbjct: 602 KTSALWTSIGKRKLGRPKTTWRRTIQAELLEMGLTWGKALKVAKDRQEWRHRVAALFPTR 661
>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
Length = 755
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -1
Query: 266 WKVSEKGR-EAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHPSR 102
W + KG+ P + ++ E +G TWE+L++TA++R WK LI+AL R
Sbjct: 616 WIGTRKGKGRGRPRKSRRRTITVEHLTIGATWEDLKRTAKNRVSWK-LIQALCSGR 670
>SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 35.1 bits (77), Expect = 0.054
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 284 SKRALTWKVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHPS 105
SK AL W + + P+ ++ EL +T E + A+DR KWK + AL P+
Sbjct: 7 SKVALRWTPPGRRKPGRPKTTWRRTILSELSKHQLTLAEAQHMARDRRKWKRFVAALCPT 66
>SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -1
Query: 281 KRALTWKVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHP 108
K AL W + + + P+ ++ EL +T E + A+DR KWK + AL P
Sbjct: 8 KVALRWTPTGRRKPGRPKTTWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCP 65
>SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -1
Query: 281 KRALTWKVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHP 108
K AL W + + + P+ ++ EL +T E + A+DR KWK + AL P
Sbjct: 8 KVALRWTPTGRRKPGRPKTTWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCP 65
>SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 281 KRALTWKVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHPS 105
K AL W + + P+ ++ EL +T E + A+DR KWK + AL P+
Sbjct: 8 KVALRWTQPGRRKPGRPKTTWRRTILSELSEHQLTLAEAQHMARDRRKWKRFVAALCPT 66
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 281 KRALTWKVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHPS 105
K AL W + + P+ ++ EL +T E + A+DR KWK + AL P+
Sbjct: 63 KVALRWTPPGRRKPGRPKTTWRRTILSELSGHQLTLAEAQHMARDRRKWKRFVAALCPT 121
>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = -1
Query: 272 LTWKVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALHPS 105
L W + + + P+ ++ +L LG++W + A++R +W+ I AL P+
Sbjct: 66 LHWTPAGRRKPGRPKTTLRRTIASKLKDLGLSWGHAQYLARNRREWRRTILALCPT 121
>SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6)
Length = 361
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 445 YLDLSYIITAFSLPSHILVKDATPTHI 525
Y L YIITA+ LP+H+L + + T I
Sbjct: 172 YDKLGYIITAYGLPTHLLTQLSIATAI 198
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 160 CSNSSHVIPKTPSSCSTEQTPSCSGAASLP 249
C+ S+ P TPS+ ST TPS S P
Sbjct: 79 CTPSTPSTPSTPSTPSTPSTPSAPSTPSTP 108
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 160 CSNSSHVIPKTPSSCSTEQTPSCSGAASLP 249
C++S+ P TPS+ ST TPS S P
Sbjct: 61 CTHSTPSAPSTPSTPSTPCTPSTPSTPSTP 90
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 124 IKFFHLHRSWAVCSNSSHVIPKTPSSCSTEQTPSCSGAASLP 249
++ HL C+ S+ P TPS+ ST TPS S P
Sbjct: 624 VRLVHLAHL-CTCTLSTPSTPSTPSTRSTPSTPSTPSTPSTP 664
>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
Length = 969
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 149 LGQSVLTLPTSYPRPLAPAPPSKRQVVLGRP 241
LG S LP+ P +P+PPS R++ LG P
Sbjct: 663 LGNSSPNLPSQEPPTSSPSPPS-RELTLGSP 692
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 169 SSHVIPKTPSSCSTEQTPSCSGAASLPFSDTFQ 267
SS +P ++ TE TPSC P DT+Q
Sbjct: 1173 SSETVPHAVTTKPTECTPSCELHCCAPAHDTYQ 1205
>SB_23925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 191 VLGMTWEELEQTAQDRCKWKNLIRALHPSR 102
V+ +W+E A DR +W+ L R P R
Sbjct: 40 VVWRSWDEARVPAIDRARWRTLERPYEPCR 69
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3
Query: 252 KRKRGRPRTTW 220
KRKRGRPR TW
Sbjct: 193 KRKRGRPRNTW 203
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3
Query: 252 KRKRGRPRTTW 220
KRKRGRPR TW
Sbjct: 553 KRKRGRPRNTW 563
>SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)
Length = 148
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3
Query: 252 KRKRGRPRTTW 220
KRKRGRPR TW
Sbjct: 111 KRKRGRPRNTW 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,489,478
Number of Sequences: 59808
Number of extensions: 425295
Number of successful extensions: 1337
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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