Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00263
         (689 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63736-1|AAB17547.1|  727|Drosophila melanogaster secreted axon ...    29   4.5  
AE014298-2044|AAF48380.3|  726|Drosophila melanogaster CG18657-P...    29   4.5  
U60316-1|AAB17533.1|  727|Drosophila melanogaster Netrin-A protein.    29   6.0  

>U63736-1|AAB17547.1|  727|Drosophila melanogaster secreted axon
           guidance molecule protein.
          Length = 727

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 280 FDL*IWRELNGRKRPGSAPGIAEVHGLSSAYKGHKKYLFLTLIPIXGFDAACPFFYLDLS 459
           FDL I + +  R RPG + G   V+G+ +     K+     +IP    +  CP   ++ S
Sbjct: 626 FDLQI-QAVFKRSRPGESSGAGNVYGMPNTTL--KRGPMTWIIPTKDLECRCPRIRVNRS 682

Query: 460 YII 468
           Y+I
Sbjct: 683 YLI 685


>AE014298-2044|AAF48380.3|  726|Drosophila melanogaster CG18657-PA
           protein.
          Length = 726

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 280 FDL*IWRELNGRKRPGSAPGIAEVHGLSSAYKGHKKYLFLTLIPIXGFDAACPFFYLDLS 459
           FDL I + +  R RPG + G   V+G+ +     K+     +IP    +  CP   ++ S
Sbjct: 625 FDLQI-QAVFKRSRPGESSGAGNVYGMPNTTL--KRGPMTWIIPTKDLECRCPRIRVNRS 681

Query: 460 YII 468
           Y+I
Sbjct: 682 YLI 684


>U60316-1|AAB17533.1|  727|Drosophila melanogaster Netrin-A protein.
          Length = 727

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 280 FDL*IWRELNGRKRPGSAPGIAEVHGLSSAYKGHKKYLFLTLIPIXGFDAACPFFYLDLS 459
           FDL I + +  R RPG + G   V+G+ +     K+     +IP    +  CP   ++ S
Sbjct: 626 FDLQI-QAVFKRTRPGESSGAGNVYGMPNTTL--KRGPMTWIIPTKDLECRCPRIRVNRS 682

Query: 460 YII 468
           Y+I
Sbjct: 683 YLI 685


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,739,046
Number of Sequences: 53049
Number of extensions: 638779
Number of successful extensions: 1904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)