Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00263
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-3|CAA21686.1|  177|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z73423-4|CAH60746.1|  307|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z73423-3|CAA97775.2|  327|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AL032646-3|CAA21686.1|  177|Caenorhabditis elegans Hypothetical
           protein Y54E2A.4 protein.
          Length = 177

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 121 RIKFFHLHRSWAVCSNSSHVIPKTPSSCSTEQTPSCSGAASL--PFSDTFQV 270
           +I+F      W+ C        + P + S  Q PS SG+ S+  P +DT  +
Sbjct: 28  QIRFPSEFLEWSNCEAEQEGFSEAPEALSLPQVPSTSGSGSIFQPIADTLLI 79


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +3

Query: 519 SHYIHSFILLLQKNVKLFSVQRTL 590
           ++YI SFI+L+Q N++  ++Q+ L
Sbjct: 759 NNYISSFIILIQANIRYLNIQKDL 782


>AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical
           protein Y94A7B.8 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 436 PFFYLDLSYIITAFSLPSHI 495
           PF Y    YII+AFSLP HI
Sbjct: 9   PFVYSMCFYIISAFSLPIHI 28


>Z73423-4|CAH60746.1|  307|Caenorhabditis elegans Hypothetical
           protein C03A3.1b protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 442 FYLD----LSYIITAFSLPSHILVKDATPTHIIFIHLYYYCK 555
           FYLD    LSY I   + P H+L     P + +  H Y +C+
Sbjct: 166 FYLDAGLTLSYAIIHIAFPQHVLSLILKPENKLDSHHYLWCR 207


>Z73423-3|CAA97775.2|  327|Caenorhabditis elegans Hypothetical
           protein C03A3.1a protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 442 FYLD----LSYIITAFSLPSHILVKDATPTHIIFIHLYYYCK 555
           FYLD    LSY I   + P H+L     P + +  H Y +C+
Sbjct: 186 FYLDAGLTLSYAIIHIAFPQHVLSLILKPENKLDSHHYLWCR 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,299
Number of Sequences: 27780
Number of extensions: 329569
Number of successful extensions: 983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)