Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00263
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19640.1 68414.m02448 S-adenosyl-L-methionine:jasmonic acid c... 33 0.18
At1g11760.1 68414.m01349 expressed protein weak similarity to Pf... 30 1.3
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 29 2.2
At1g76560.1 68414.m08909 CP12 domain-containing protein contains... 29 3.8
At4g16850.1 68417.m02545 expressed protein 28 5.1
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei... 28 5.1
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei... 28 5.1
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 28 6.7
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu... 28 6.7
At5g57360.1 68418.m07166 F-box family protein / LOV kelch protei... 27 8.9
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 27 8.9
>At1g19640.1 68414.m02448 S-adenosyl-L-methionine:jasmonic acid
carboxyl methyltransferase (JMT) nearly identical to
gi:13676829
Length = 389
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -1
Query: 362 ESPWTSAMPGAEPGRFLPLSSLQIYKSKRALTWKVSEKGREAAPEQLGVCSVEQELG 192
ES + SA+PG+ GR P SL S +L W REA E + + + +G
Sbjct: 132 ESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCREAEKEDRTITADLENMG 188
>At1g11760.1 68414.m01349 expressed protein weak similarity to Pfam
PF01648: 4'-phosphopantetheinyl transferase superfamily
Length = 393
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = -1
Query: 311 PLSSLQIYKSKRALTWKVSE--KGREAAPEQLGVCSVEQELGVLG----MTWEELEQT 156
P+S++++ + RA+ W V E +G AP+ S E+E VLG + W+ L T
Sbjct: 125 PISAVRLEQMSRAVRWLVLELQRGSGVAPDSSFSDSDEKEFWVLGKFDWLVWKHLPNT 182
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187;
contains Pfam profile PF02845: CUE domain
Length = 1973
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 155 QSVLTLPTSYPRPLAPAPPSKRQV 226
QS T+ +S+P P+ P+PPS+ ++
Sbjct: 31 QSPSTVVSSFPAPVTPSPPSQEEI 54
>At1g76560.1 68414.m08909 CP12 domain-containing protein contains
Pfam domain PF02672: CP12 domain
Length = 134
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 263 KVSEKGREAAPEQLGVCSVEQELGVLGMTWEELEQTAQDRCKWKNLIRALH 111
K+SE E E VC E+ + W+E+E+ +Q R + ++ L+
Sbjct: 62 KLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLN 112
>At4g16850.1 68417.m02545 expressed protein
Length = 313
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +1
Query: 316 KRPGSAPGIAEVHGLSSAYKGHKKYLFLTLIPIXGFDAACPFFYLDLSYIITAFSLPSHI 495
KRPGS+ I S K++ L+PI F A P L LS +T+F L +H+
Sbjct: 5 KRPGSSTRITTTLLDSFMILFRNKHI---LLPIFAF-IAIPLAALHLSLTLTSFRLKNHV 60
Query: 496 LVKDA 510
+A
Sbjct: 61 FRLEA 65
>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 611
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +1
Query: 148 SWAVCSNSSHVIPKT-PSSCSTEQTP-----SCSGAASLPFSDTFQVSALFDL*IWREL 306
SW S + IP++ SSC+ + T C+ + +L SDTF + D+ WRE+
Sbjct: 385 SWREVSGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGAL-LSDTFLLDLSMDIPAWREI 442
>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 601
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +1
Query: 148 SWAVCSNSSHVIPKT-PSSCSTEQTP-----SCSGAASLPFSDTFQVSALFDL*IWREL 306
SW S + IP++ SSC+ + T C+ + +L SDTF + D+ WRE+
Sbjct: 375 SWREVSGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGAL-LSDTFLLDLSMDIPAWREI 432
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 173 PTSYPRPLAPAPPSKRQVVLGRP 241
P S P+ P PP +RQ GRP
Sbjct: 173 PISQPQSRGPPPPQRRQQYKGRP 195
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1278
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 427 AACPFFYLDLSYIITAFSLPSHILVKDATPTHIIFIHL 540
A P F + +S +I AF P+H L +D+ IIF+ L
Sbjct: 722 AIFPLFGILISRVIEAFFKPAHELKRDSRFWAIIFVAL 759
>At5g57360.1 68418.m07166 F-box family protein / LOV kelch protein 1
(LKP1) E3 ubiquitin ligase SCF complex F-box subunit;
identical to clock-associated PAS protein ZTL; ZEITLUPE
GI:7839456, LOV kelch protein 1 GI:11610573, Adagio 1
GI:13487068 from [Arabidopsis thaliana]; contains Pfam
profile PF01344: Kelch motif; identical to cDNA Adagio 1
(ADO1) GI:13487067; identical to cDNA LKP1 mRNA for LOV
kelch protein 1, GI:11610572
Length = 609
Score = 27.5 bits (58), Expect = 8.9
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = +1
Query: 148 SWAVCSNSSHVIPKT-PSSCSTEQTP-----SCSGAASLPFSDTFQVSALFDL*IWRELN 309
+W S + +P++ SSC+ + T C+ + L SDTF + + +WRE+
Sbjct: 384 TWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVL-LSDTFLLDLSIEKPVWREIP 442
Query: 310 GRKRPGSAPGIAEVHGLSSAYKGHKKYLF 396
P S G H L S Y G K +F
Sbjct: 443 AAWTPPSRLG----HTL-SVYGGRKILMF 466
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 113 VGLESNFSIY--IGLGQSVLT-LPTSYPRPLAPAPPS 214
+ + +FS++ I + LT LP S P P++P PPS
Sbjct: 180 IPVNGSFSLFTPISFANTKLTPLPASPPPPISPTPPS 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,070
Number of Sequences: 28952
Number of extensions: 305427
Number of successful extensions: 878
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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