Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00262
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0097 - 1450544-1452058                                           30   1.8  
01_07_0068 - 40861266-40861381,40861469-40861718,40861813-408619...    30   1.8  
03_06_0189 + 32214702-32215154                                         29   2.4  
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217...    29   3.1  
07_01_0130 - 963856-965454                                             28   5.5  

>09_01_0097 - 1450544-1452058
          Length = 504

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 566 NASLYSRLLGIPRLWGIIATPIPSTKEFSGLPGPLG 459
           +A  +   L +PRL  +  TP+PS ++  G+PG  G
Sbjct: 154 SAFAFLAYLSVPRLLELGETPVPSDEQVRGVPGMEG 189


>01_07_0068 -
           40861266-40861381,40861469-40861718,40861813-40861914,
           40862687-40862759,40863590-40863754,40866380-40866459,
           40867565-40867630,40867764-40868123,40868388-40868648
          Length = 490

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +1

Query: 415 GRTRATLKESACSPW-----PRGPGNPLNSFVLGIGVAIIPHKRGIPSKREYKLA 564
           G  + T   +  +PW      RGPG  + +  L  GV +     G PSK EY+++
Sbjct: 102 GGEKETTTATVTTPWFRVQRGRGPGGAMATVTLHGGVGMAYRIDGCPSKSEYRIS 156


>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 108 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 1
           AA + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 30  AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>02_04_0451 +
           23021139-23021269,23021366-23021498,23021594-23021789,
           23023376-23023737,23024049-23024363
          Length = 378

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -2

Query: 225 LHQLRTAMHHHP--PNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSF 52
           LH L T     P  P +  +   +ILP   PG  S + S    G TP G +   P  F F
Sbjct: 313 LHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 222 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 124
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,071,924
Number of Sequences: 37544
Number of extensions: 472075
Number of successful extensions: 1231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)