Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00262
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   3.7  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    28   4.9  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical p...    27   8.6  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    27   8.6  
AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor tyro...    27   8.6  
AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyro...    27   8.6  
AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical...    27   8.6  

>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 185
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
            protein Y80D3A.8 protein.
          Length = 1293

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = -3

Query: 587  TKGRDVINASLYSRLLGIPRLWGIIATPIPSTKEFSGLPGPLGQGEHADSFSVARVRPRT 408
            T G+ ++N  +Y R L +    G +AT      +++G         HA+ F +  +  ++
Sbjct: 1131 TDGKSILNKKIYQRTLEVVDSTGKLATRTVMHYQYAGWTARGVPKSHAEMFDLMEMLKKS 1190

Query: 407  SKGI 396
             K I
Sbjct: 1191 EKPI 1194


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 174 AVNLSILPVSGPGEISRVESN*AAGSTPGG-ALPSIPLSFSFATILPPESKIFGFP 10
           A N S+   S P  + R  S  +  +TP G A P  PLS S +    P+S   G P
Sbjct: 513 ATNTSVSS-STPRSVVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTP 567


>Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 8   SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 145
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 8   SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 145
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 8   SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 145
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 8   SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 145
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical
           protein C01G6.8c protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 8   SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 145
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 348 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 397


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 87  HQEWSLRLNLTQHGKSHQARTP 152
           H +W ++ NL +HG ++ A  P
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVP 717


>AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 8   SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 145
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 8   SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 145
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical
           protein Y47G6A.3 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 98  EPAA*FDSTREISPGPDTGRIDRL 169
           EP+A FD+  ++ PG    RIDR+
Sbjct: 100 EPSALFDNANDLLPGQKEERIDRM 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,718
Number of Sequences: 27780
Number of extensions: 346853
Number of successful extensions: 857
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)