Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00262
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50840.1 68414.m05717 polI-like DNA polymerase, putative simi...    32   0.28 
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    28   6.1  
At5g58200.1 68418.m07285 expressed protein                             27   8.0  

>At1g50840.1 68414.m05717 polI-like DNA polymerase, putative similar
           to PolI-like DNA polymerase [Oryza sativa] GI:19912795
           contains Pfam profiles PF01612: 3'-5' exonuclease,
           PF00476: DNA polymerase I family A
          Length = 1050

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 576 GRNQRELILALTRNSSFMGDNCNPNPQHEGVQR 478
           G  Q E +++L R    +GDN + NP+ EG+QR
Sbjct: 191 GITQSEPVVSLPRKGLDVGDNMDVNPKGEGIQR 223


>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 66  KELTEGHHQEWSLRLNLTQHGKSHQARTPEG 158
           KEL+EG HQE   + N    GK ++ R P G
Sbjct: 238 KELSEGFHQERDGKKN--AEGKGYECRIPAG 266


>At5g58200.1 68418.m07285 expressed protein
          Length = 222

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 553 YKLALITSLPFVHTARRYYRLNDLVRSFG 639
           +KL+++   PF H   R +R N LV+ +G
Sbjct: 21  FKLSIVGGRPFSHGGDRLFRKNLLVQRYG 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,948,989
Number of Sequences: 28952
Number of extensions: 328712
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)