Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00261
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    41   2e-04
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   3.6  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   3.6  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   6.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.3  

>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 318 SLLYNGSKFQGHQKSKGNS-YEVEVVLQHVDEENSYLCGYLKI 443
           S L NG+KFQG QK   +S  EV V + HV+   S LCG++ +
Sbjct: 5   SFLRNGAKFQGKQKGVSSSTLEVHVTILHVNLAKSMLCGFIHV 47



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 526 KWDADEDVDRKHWSK 570
           +W A E++D +HW +
Sbjct: 78  EWGASEEIDNRHWKR 92


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 590 YGTNKSNLLQCFLSTSSSASHFLV 519
           YG+N+  +LQ F S SSS+S  LV
Sbjct: 211 YGSNEEKILQEFESFSSSSSESLV 234


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 586 PYLKTFNSDSFDYESLAKVIMCL-*DGRTFFSSGSYNKGYKWCFFC 720
           PY     SD FD+     V +C+   GR   SSG   K + +C  C
Sbjct: 194 PYFSLLYSDGFDFIKFLHVCVCVKCHGREHRSSG---KNFVYCDHC 236


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 249 NNPVKVDITPPPPANSKQPGVTKSLLYNGSKFQG 350
           NNPV V  T P P +SKQ      LLY  +   G
Sbjct: 315 NNPVSV--TYPDPVSSKQVSEGMPLLYGMTALMG 346


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 502 IQNPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFN 606
           IQNPF  ++  AD D     W    + V  ++ FN
Sbjct: 764 IQNPFKLKETTADNDPVSLRWEHLYMKVQDVRKFN 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,229
Number of Sequences: 5004
Number of extensions: 55303
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)