Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00261
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)                 106   2e-23
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_33215| Best HMM Match : HECT (HMM E-Value=0)                        29   5.0  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          28   6.7  
SB_13309| Best HMM Match : EGF (HMM E-Value=0)                         28   8.8  
SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)                     28   8.8  

>SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)
          Length = 444

 Score =  106 bits (254), Expect = 2e-23
 Identities = 50/80 (62%), Positives = 60/80 (75%)
 Frame = +3

Query: 255 PVKVDITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEENSYLCGY 434
           P KV   P PP+ +KQPG+ +SLLY+GS+FQGHQKSKGN Y+VEVVLQHVDEE+++LCGY
Sbjct: 244 PGKVAANPLPPS-TKQPGLAQSLLYSGSRFQGHQKSKGNRYDVEVVLQHVDEESAFLCGY 302

Query: 435 LKIKGXXXXXXXXXXXXDGE 494
           LKIKG            DGE
Sbjct: 303 LKIKGLTEEYPTLTTYFDGE 322



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +1

Query: 505 QNPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYESL 633
           ++PFLTRKWDADEDVD+KHWSKF  F  + KTFNSD+FDY  L
Sbjct: 327 KHPFLTRKWDADEDVDKKHWSKFLAFYQFAKTFNSDTFDYSQL 369



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 662 EEHFLVPDHTIKDINGASFA 721
           +E FLVPDH I+DINGASFA
Sbjct: 380 KEQFLVPDHKIRDINGASFA 399


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 246 KNNPVKVDITPPPPANSKQPGVTKSLLY 329
           K +P++   TPPPP  S  P V K+LL+
Sbjct: 212 KTHPLRRQNTPPPPPKSGLPTVGKALLF 239


>SB_33215| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1128

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 189 LIAQFCNCH-IYKS*VIVLWKNNPVKVDITPPPPANSKQPGVTKSLLYNGSKFQGHQKSK 365
           +I   C  H +Y     +   NN  ++D +  PPA S  PG+ +     G+    HQ S+
Sbjct: 519 VIDMLCYEHMVYVLDAFIYSINNWPRLDTSAQPPAQSPTPGLAREATEAGTSL--HQHSR 576

Query: 366 GNSYEVE 386
             S E E
Sbjct: 577 RLSRESE 583


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 620  SNESELKVFKYGTNKSNLLQCFLSTSSSASHFL 522
            ++ S L+VF   ++   LL  FL++SSS S FL
Sbjct: 981  TSSSSLRVFLTSSSSRGLLSDFLTSSSSLSDFL 1013


>SB_13309| Best HMM Match : EGF (HMM E-Value=0)
          Length = 718

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 661 GRTFFSSGSYNKGYKWCF 714
           G TFF    + KG KWC+
Sbjct: 43  GLTFFGGTDWEKGMKWCY 60


>SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)
          Length = 332

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
 Frame = +3

Query: 174 LSRYLLIAQFCNCHIYKS*VIVLWKNNPVKVDITPPPPANSKQPGVTKSLLYNGS----- 338
           L  + + +Q  N + YKS +       P  V+ITPP P  +++  V  +   +G+     
Sbjct: 34  LRAFSISSQRKNSYCYKSII------PPSSVNITPPSPTVTERDQVNLTCSADGTPPPTF 87

Query: 339 ---KFQGHQKSKGNSYEVEVVLQHVDEENSYLC 428
                QGH  + G SY + +V  H D    Y C
Sbjct: 88  TWISPQGHTVAHGPSYTIPMV--HRDMAGVYTC 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,127,387
Number of Sequences: 59808
Number of extensions: 380113
Number of successful extensions: 910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)