Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00260
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    26   0.28 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   1.1  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    23   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.1  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 454 QRNFQHSQHSLMVK*FHPISLSN 522
           Q+N  H + S MV   HP+SLS+
Sbjct: 319 QQNMSHEELSAMVNRCHPLSLSS 341


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 566 SKFDLFVPYLKTFNSDSFDY----ESLAKADYVFMRWKEHFLVPDHTIKDINGASF 721
           S+  + +P+ +TF +   +     E LA+ ++    W +H L+P  T + +    F
Sbjct: 546 SQSSVTIPFERTFRNLDLNRPQGGEELAQFNFCGCGWPQHMLIPKGTPEGMKSQLF 601


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 490 VK*FHPISLSNK 525
           VK FHP++LSNK
Sbjct: 46  VKHFHPLALSNK 57


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 4/11 (36%), Positives = 7/11 (63%)
 Frame = -1

Query: 284 WRWCNVYFHWI 252
           W WC ++  W+
Sbjct: 131 WMWCLIFAFWV 141


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 4/11 (36%), Positives = 7/11 (63%)
 Frame = -1

Query: 284 WRWCNVYFHWI 252
           W WC ++  W+
Sbjct: 131 WMWCLIFAFWV 141


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 4/11 (36%), Positives = 7/11 (63%)
 Frame = -1

Query: 284 WRWCNVYFHWI 252
           W WC ++  W+
Sbjct: 131 WMWCLIFAFWV 141


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 4/11 (36%), Positives = 7/11 (63%)
 Frame = -1

Query: 284 WRWCNVYFHWI 252
           W WC ++  W+
Sbjct: 131 WMWCLIFAFWV 141


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 255 DYFSIRR*PSSCKCDSCRTER 193
           DYFS+++ PS      C   R
Sbjct: 164 DYFSVKKLPSPASDSECFDRR 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,688
Number of Sequences: 336
Number of extensions: 3687
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)