Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00260
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    46   4e-06
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    44   3e-05
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    30   0.41 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    30   0.41 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    29   0.95 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   3.8  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   5.1  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   6.7  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +2

Query: 515 FLTRKWDADEDVDRKHWSKFDLFV-----PYLKTFNSDSFDYESLAKADYVFMRWKEHFL 679
           F T KW A  ++D  +W K   F       +L+T  +    Y+   K  Y+FMRWK+  +
Sbjct: 431 FATEKWSAPLEIDVCYWRKLAPFQNMDTNTFLETITNPKKLYKICQK--YIFMRWKDMLI 488

Query: 680 VPDHTIKDINGASFAGFYYIC 742
           + D T  D + +   GFY+ C
Sbjct: 489 LKDQT--DTSESRITGFYFCC 507


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 318 SLLYNGSKFQGHQKSKGNS-YEVEVVLQHVDEENSYLCGYLKIKGXXXXXXXXXXXXDGE 494
           S L NG+KFQG QK   +S  EV V + HV+   S LCG++ +              + E
Sbjct: 5   SFLRNGAKFQGKQKGVSSSTLEVHVTILHVNLAKSMLCGFIHVSYTSPNNTSLTTYFEAE 64

Query: 495 IISSNIPF 518
           II +   F
Sbjct: 65  IIGNRFTF 72



 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
 Frame = +2

Query: 527 KWDADEDVDRKHWSKFDLFVPYLKTFNSDSFD-YESLAKADYVFMRWKEHFLVPDHTIKD 703
           +W A E++D +HW +        K         Y+ L++ + V+MRWKE  ++ D T+  
Sbjct: 78  EWGASEEIDNRHWKRLGALKSNGKDIPLRLIQPYDPLSR-ETVYMRWKELAML-DKTVDY 135

Query: 704 IN-------GASFAGFYYICFHKS 754
            N       G S+ GFYYI F +S
Sbjct: 136 QNHNQSFPFGISYEGFYYISFSQS 159


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 608 SDSFDYESLAKADYVFMRWKEHFLVPDHTIKDINGASFAGFYYICFHKS 754
           +DSF Y    + DY F R +E ++   H + D+    +   Y  CF K+
Sbjct: 89  NDSFPYGGDKRGDYAFNRIREKYMAVLHALNDM-VPCYLPPYSTCFEKN 136


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 566 SKFDLFVPYLKTFNSDSFDYESLAKADYVFMRWKEHFL 679
           SK++ F+  L+ ++ + FD  +L +  YVF    EH +
Sbjct: 529 SKYNEFIKLLELYSQEVFDKNALVERCYVFFGSNEHLM 566


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 654 NT*SAFARDS*SNESELKVFKYGTNKSNLLQCFLSTSSSASHFLVRK 514
           NT S F  D  SNE     F     +  LL+C   T ++ +H L  K
Sbjct: 353 NTESGFTEDKKSNEDTSTNFVTIKQEKELLKCLCDTLNAIAHILFLK 399


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 591 YGTNKSNLLQCFLSTSSSASHFLV 520
           YG+N+  +LQ F S SSS+S  LV
Sbjct: 211 YGSNEEKILQEFESFSSSSSESLV 234


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +1

Query: 661 MERTFFSSGSYNKGYKWC--FFC 723
           M+ T +  G  N G+ WC  FFC
Sbjct: 238 MKSTNYDLGKVNNGWSWCLTFFC 260


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 249 NNPVKVDITPPPPANSKQPGVTKSLLYNGSKFQG 350
           NNPV V  T P P +SKQ      LLY  +   G
Sbjct: 315 NNPVSV--TYPDPVSSKQVSEGMPLLYGMTALMG 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,353
Number of Sequences: 5004
Number of extensions: 59368
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)