Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00260
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0681 - 26685995-26686073,26686174-26686301,26686368-266864...    63   3e-10
01_01_0291 + 2385464-2385515,2386010-2386071,2386177-2386320,238...    61   8e-10
02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117           31   1.00 
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    30   2.3  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    30   2.3  
03_02_0724 - 10718756-10718931,10719008-10719233,10719330-107194...    29   4.0  
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167...    29   5.3  
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983...    29   5.3  
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210...    28   7.0  
04_01_0522 - 6865049-6865131,6865214-6865388,6865692-6865877,686...    28   7.0  

>03_05_0681 -
           26685995-26686073,26686174-26686301,26686368-26686454,
           26686532-26686586,26686715-26686788,26687024-26687167,
           26687267-26687328,26689018-26689141
          Length = 250

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
 Frame = +2

Query: 509 YPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYESLAKADYVFM--------RW 664
           Y F T KW+A  + D +HWSKF  F P L    +D      L+   Y+FM        RW
Sbjct: 125 YTFFTGKWEASPEDDIRHWSKFPSFTPLLSQIETDGGKSVDLSNYAYIFMVLHHLTFHRW 184

Query: 665 KEHFLVPDHTIKDINGASFAGFYYICF 745
           KE + V    +    G + AGFYY+CF
Sbjct: 185 KEQYFV---NVGVDCGLTIAGFYYVCF 208


>01_01_0291 +
           2385464-2385515,2386010-2386071,2386177-2386320,
           2386496-2386569,2386698-2386752,2386830-2386916,
           2386983-2387110,2387211-2387289
          Length = 226

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
 Frame = +2

Query: 509 YPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYESLAKADYVFM--------RW 664
           Y F T KW+A  + D +HWSKF  F P L    +D       +   Y+FM        RW
Sbjct: 101 YTFFTGKWEASPEDDIRHWSKFPSFTPLLSQIETDGGKSVDFSNYAYIFMVLHHLTFHRW 160

Query: 665 KEHFLVPDHTIKDINGASFAGFYYICF 745
           KE + V    +    G + AGFYY+CF
Sbjct: 161 KEQYFV---NVGVDCGLTIAGFYYVCF 184



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = +3

Query: 288 ANSKQPGVTK-SLLYNGSKFQGHQK----SKGNSYEVEVVLQHVDEENSYLCGYLKIKGX 452
           AN+  P     SLL  G  + G Q      K  +++V V +   D E  YLCG ++    
Sbjct: 21  ANAGHPSPPSCSLLSAGRCYAGTQNVSTIQKEEAWKVNVRINDCDLEQGYLCGTMEAVNV 80

Query: 453 XXXXXXXXXXXDGEIISS 506
                      +GEI+ +
Sbjct: 81  PLADTPVVTFWEGEIVDA 98


>02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117
          Length = 386

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +3

Query: 270 ITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEENSYLCGYL 437
           + PP   NS +PGV ++L+ NG   +G     G  + V +    VD E+S L G++
Sbjct: 189 LNPPRRTNSVRPGVAENLVKNGDFEEGPYIIPGTRWGVLIPSMVVD-EHSPLPGWM 243


>12_01_0014 +
           105422-105520,105598-105725,105939-106101,106198-106310,
           106787-106825,107026-107109,107193-107241,107331-107422,
           107680-107809,107906-107982,108058-109676,110024-110221,
           110287-110825
          Length = 1109

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +3

Query: 234 IVLWKNNPVKVDITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEE 413
           I LW    +    T    +   QPG+  S+    +   GHQ+  G  Y    V +H   +
Sbjct: 658 ISLWNGKEINHTSTSDRTSTMMQPGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMK 717

Query: 414 N 416
           N
Sbjct: 718 N 718


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +3

Query: 234 IVLWKNNPVKVDITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEE 413
           I LW    +    T    +   QPG+  S+    +   GHQ+  G  Y    V +H   +
Sbjct: 715 ISLWNGKEINHTSTSDRTSTMMQPGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMK 774

Query: 414 N 416
           N
Sbjct: 775 N 775


>03_02_0724 -
           10718756-10718931,10719008-10719233,10719330-10719400,
           10719496-10719583
          Length = 186

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 155 FQFYLNFSLIDRTYVLHDGCTITIKR*KQICWGSFTSL 42
           F+F+   S+ D  Y L  GC+ TIKR      G F  L
Sbjct: 103 FRFFNGASVEDARYALRRGCSHTIKRAGSFRAGDFNDL 140


>10_01_0140 -
           1674305-1674586,1674683-1674838,1675676-1676622,
           1678976-1679054,1679168-1679207,1679580-1679767,
           1679869-1680024,1680752-1681713,1681866-1681914
          Length = 952

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 524 RKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYE 628
           ++W   E +D KHWS+F      L   N D F+Y+
Sbjct: 446 KQWSQSELIDIKHWSQFQ---RELSLKNIDMFEYK 477


>03_05_0717 +
           27097367-27097621,27097744-27097866,27098136-27098303,
           27098393-27100072
          Length = 741

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 100 VVRLQ*KGKNRYAGDLSHHLDLVKVRKQTPQI 5
           V+  Q KG+N + G  SHHLD+ ++    P I
Sbjct: 326 VINKQLKGRNAWNGARSHHLDVQQLPSGKPWI 357


>12_02_0002 +
           12119832-12120003,12120620-12120866,12121011-12121050,
           12121584-12121676,12124850-12124928,12124973-12125019,
           12126178-12126266,12126353-12126424,12126617-12126710,
           12127167-12127206,12127321-12127445,12130472-12130615,
           12131510-12131740
          Length = 490

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 359 FLMSLKFRAVVKEGFCHTRLF*ISWWRWCNV 267
           FL+S+  +AV +    HTRL  I+ WR C++
Sbjct: 254 FLLSIVIKAVWRAKALHTRLNAIAVWRRCHM 284


>04_01_0522 -
           6865049-6865131,6865214-6865388,6865692-6865877,
           6866489-6866599,6866678-6866890,6867446-6867553,
           6867632-6867773,6867855-6868951,6871287-6871559
          Length = 795

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 297 KQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEE 413
           ++ G+ + ++ +G  FQG  K +  +Y V+ +LQ  D++
Sbjct: 694 EREGLIREIVSSGQTFQGLMKDQFGNYVVQRILQTCDDK 732


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,560,681
Number of Sequences: 37544
Number of extensions: 332079
Number of successful extensions: 1038
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)