Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00260
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)                 149   3e-36
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          29   4.1  
SB_50555| Best HMM Match : Glutaredoxin (HMM E-Value=4.9)              29   5.4  
SB_33215| Best HMM Match : HECT (HMM E-Value=0)                        29   5.4  
SB_6227| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)                     28   9.5  

>SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)
          Length = 444

 Score =  149 bits (360), Expect = 3e-36
 Identities = 63/84 (75%), Positives = 70/84 (83%)
 Frame = +2

Query: 506 QYPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYESLAKADYVFMRWKEHFLVP 685
           ++PFLTRKWDADEDVD+KHWSKF  F  + KTFNSD+FDY  L   D+VFMRWKE FLVP
Sbjct: 327 KHPFLTRKWDADEDVDKKHWSKFLAFYQFAKTFNSDTFDYSQLDNLDFVFMRWKEQFLVP 386

Query: 686 DHTIKDINGASFAGFYYICFHKSA 757
           DH I+DINGASFAGFYYIC  KSA
Sbjct: 387 DHKIRDINGASFAGFYYICLQKSA 410



 Score =  113 bits (271), Expect = 2e-25
 Identities = 54/88 (61%), Positives = 64/88 (72%)
 Frame = +3

Query: 255 PVKVDITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEENSYLCGY 434
           P KV   P PP+ +KQPG+ +SLLY+GS+FQGHQKSKGN Y+VEVVLQHVDEE+++LCGY
Sbjct: 244 PGKVAANPLPPS-TKQPGLAQSLLYSGSRFQGHQKSKGNRYDVEVVLQHVDEESAFLCGY 302

Query: 435 LKIKGXXXXXXXXXXXXDGEIISSNIPF 518
           LKIKG            DGEII    PF
Sbjct: 303 LKIKGLTEEYPTLTTYFDGEIIGRKHPF 330


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 246 KNNPVKVDITPPPPANSKQPGVTKSLLY 329
           K +P++   TPPPP  S  P V K+LL+
Sbjct: 212 KTHPLRRQNTPPPPPKSGLPTVGKALLF 239


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 651  T*SAFARDS*SNESELKVFKYGTNKSNLLQCFLSTSSSASHFL 523
            T S+   D  ++ S L+VF   ++   LL  FL++SSS S FL
Sbjct: 971  TSSSSLSDFLTSSSSLRVFLTSSSSRGLLSDFLTSSSSLSDFL 1013


>SB_50555| Best HMM Match : Glutaredoxin (HMM E-Value=4.9)
          Length = 201

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 734 NKNQQKKHHLYPLLYDPELKNVLSIS*THNQPLLETHN 621
           NKN   K+    +L+   +K +L IS +HN+ L++ HN
Sbjct: 154 NKNMFLKYKFRVILHTDSVK-ILGISFSHNEGLIKKHN 190


>SB_33215| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1128

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 189 LIAQFCNCH-IYKS*VIVLWKNNPVKVDITPPPPANSKQPGVTKSLLYNGSKFQGHQKSK 365
           +I   C  H +Y     +   NN  ++D +  PPA S  PG+ +     G+    HQ S+
Sbjct: 519 VIDMLCYEHMVYVLDAFIYSINNWPRLDTSAQPPAQSPTPGLAREATEAGTSL--HQHSR 576

Query: 366 GNSYEVE 386
             S E E
Sbjct: 577 RLSRESE 583


>SB_6227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 656 MRWKEHFLVPDHTIKDINGASFAGF 730
           +R K+H   PDH I D+N  ++ GF
Sbjct: 14  LRLKKHDFNPDHFIADLNDVNWEGF 38


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 569 KFDLFVPYLKTFNSDSFDYESLAKADYVFMRWKEH 673
           +F  +VPYL+  +S   +   LAK    F+R K H
Sbjct: 131 RFFFWVPYLRVKDSRECELNCLAKGHKFFLRLKPH 165


>SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)
          Length = 332

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
 Frame = +3

Query: 174 LSRYLLIAQFCNCHIYKS*VIVLWKNNPVKVDITPPPPANSKQPGVTKSLLYNGS----- 338
           L  + + +Q  N + YKS +       P  V+ITPP P  +++  V  +   +G+     
Sbjct: 34  LRAFSISSQRKNSYCYKSII------PPSSVNITPPSPTVTERDQVNLTCSADGTPPPTF 87

Query: 339 ---KFQGHQKSKGNSYEVEVVLQHVDEENSYLC 428
                QGH  + G SY + +V  H D    Y C
Sbjct: 88  TWISPQGHTVAHGPSYTIPMV--HRDMAGVYTC 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,878,704
Number of Sequences: 59808
Number of extensions: 400169
Number of successful extensions: 990
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)