Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00260
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    31   0.67 
Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.        29   2.7  

>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 757 CRLMKTYIIKTSKRSTIYILYCMIRN*KMFFPSHKHII 644
           C+L+  ++ K  + +  ++LY +    K FFP H+H++
Sbjct: 350 CKLIALFVKKAPENADQFVLYFITLYQKPFFPIHRHLL 387


>Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical
           protein K02A4.1 protein.
          Length = 415

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 231 VIVLWKNNPVKVD-ITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVD 407
           + + WKN    ++ ITPP       PGVT+  L    +  G  K    +  +E V + + 
Sbjct: 285 IFLFWKNEEGDMELITPPLHRGLILPGVTRDSLLELGREWGEYKVTERTLNMEEVKKALS 344

Query: 408 EENSY 422
           E+  Y
Sbjct: 345 EKRLY 349


>U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 231 VIVLWKNNPVKVD-ITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVD 407
           + + WKN    ++ ITPP       PGVT+  L    +  G  K    +  +E V + + 
Sbjct: 266 IFLFWKNEEGDMELITPPLHRGLILPGVTRDSLLELGREWGEYKVTERTLNMEEVKKALS 325

Query: 408 EENSY 422
           E+  Y
Sbjct: 326 EKRLY 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,048,789
Number of Sequences: 27780
Number of extensions: 327535
Number of successful extensions: 939
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)