Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00260
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   1.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.5  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 566 SKFDLFVPYLKTF-NSDS---FDYESLAKADYVFMRWKEHFLVP 685
           +K  + +P+ +TF N D       +SL + D+    W +H L+P
Sbjct: 547 TKSSVTIPFERTFRNLDENRPIGGDSLERFDFCGCGWPQHMLIP 590


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 207 NCHIYKS*VIVLWKNNPVKVDITPP 281
           N H YK+ +IV++    VK  +  P
Sbjct: 64  NSHQYKNPIIVMYYAGAVKAGLVQP 88


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 563 NVSYQHLHQHPIFLLERDI 507
           ++ YQH H  P+F  ++ +
Sbjct: 5   HIHYQHYHITPVFTKQKKV 23


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 659 RWKEHFLVPDHTIKDINGASFAG 727
           R +EH ++P H I+ I    + G
Sbjct: 323 RSREHRIIPSHYIEQIPAPVYYG 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,640
Number of Sequences: 438
Number of extensions: 4472
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)