Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00260
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37680.1 68415.m04621 phytochrome A specific signal transduct...    44   1e-04
At3g61970.1 68416.m06960 DNA-binding protein, putative similar t...    32   0.48 
At5g38300.1 68418.m04622 expressed protein predicted protein, rice     30   1.5  

>At2g37680.1 68415.m04621 phytochrome A specific signal transduction
           component (PAT3) / far-red elongated hypocotyl protein 1
           (FHY1) identical to phytochrome A specific signal
           transduction component PAT3 [Arabidopsis thaliana]
           gi|19421998|gb|AAL87850; identical to far-red elongated
           hypocotyl protein 1 [Arabidopsis thaliana]
           gi|17148773|gb|AAL35819
          Length = 313

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/79 (34%), Positives = 34/79 (43%)
 Frame = +2

Query: 509 YPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYESLAKADYVFMRWKEHFLVPD 688
           Y F T KW+A  + D +HWSKF  F P                       RWKE + V  
Sbjct: 76  YTFYTGKWEATREDDMRHWSKFPSFSP---------------------LQRWKEQYFV-- 112

Query: 689 HTIKDINGASFAGFYYICF 745
             +    G + AGFYY+CF
Sbjct: 113 -NVGTDCGLTIAGFYYVCF 130



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 312 TKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEENSYLCGYLKIKGXXXXXXXXXXXXDG 491
           T +  ++G++   +Q+ K  ++ V V +Q +D E+ YLCG ++               +G
Sbjct: 10  TPAQAFSGTQNVSNQQ-KEEAWRVNVQIQGIDLEHGYLCGTMEALNVPMADTPVITFWEG 68

Query: 492 EII 500
           EI+
Sbjct: 69  EIV 71


>At3g61970.1 68416.m06960 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857 and RAV2 GI:3868859, AP2 domain containing
           protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 299

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 530 WDADED-VDRKHWSKFDLFVPYLKTFNSDSFDYESLAKADYVFMRWKEHFLVPDHTIKDI 706
           W++ +  V  K WS+F +    L   +  SF  +S  K D +++ W+    +PDH  +  
Sbjct: 82  WNSSQSYVMTKGWSRF-VKDKKLDAGDIVSFQRDSCNK-DKLYIDWRRRPKIPDHHHQQF 139

Query: 707 NGASFAGFY 733
            GA F  FY
Sbjct: 140 AGAMFPRFY 148


>At5g38300.1 68418.m04622 expressed protein predicted protein, rice
          Length = 263

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = +3

Query: 237 VLWKNN--PVKVD-ITPPPP-ANSKQPGVTKSLLYNGSK--FQGHQKSKG 368
           V+ K N  PV ++ ITPPPP + S+  GV       GSK    G +KSKG
Sbjct: 156 VIRKENRRPVNINTITPPPPTSKSRNGGVLTGSASRGSKSASAGEKKSKG 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,199
Number of Sequences: 28952
Number of extensions: 292891
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)