Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00259
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.1  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   5.5  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.5  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   7.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.6  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -1

Query: 205 LSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSW 104
           LSS  H    PS R +    R   +Y    + SW
Sbjct: 286 LSSIRHPESNPSERVMRELGRIFRAYCRENHASW 319


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 585 LMTAALCSTARNMDLSTLGGRFRLRS 662
           L T    S  ++ D+S+   RFRLRS
Sbjct: 40  LKTTQSVSVTKDQDVSSSVNRFRLRS 65


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 188 YSSDTKCTHSGKSSTVALFLPKSKIRILGS 99
           Y+ D  CTH      +++  P+S    +GS
Sbjct: 365 YNQDVSCTHYQNPEYISVVNPESPYPQIGS 394


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 180 GHQVHAQWKVVN 145
           GH +HAQ  VVN
Sbjct: 327 GHHIHAQHHVVN 338


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 611 GTAQCSRH*RGGPLHEALKLITFILCETPLL 519
           G   C  H    PL    KL+TFIL   P L
Sbjct: 35  GCKACGYH---SPLESNHKLVTFILKNPPNL 62


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 187 IRRTPSARTVESRQRSLSSYP 125
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQMFLADRERGLKYYP 68


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 187 IRRTPSARTVESRQRSLSSYP 125
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQLFLAERERGLKYYP 68


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 584  ANDGCIVQYRPEHGPLDAW 640
            A +G I  Y+  +GP D W
Sbjct: 1128 AANGVIKGYKVIYGPSDTW 1146


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,963
Number of Sequences: 336
Number of extensions: 4000
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)