Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00259
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   146   2e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   146   2e-36
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    29   0.48 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.64 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   1.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   4.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.9  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    25   7.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   7.9  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  146 bits (355), Expect = 2e-36
 Identities = 64/78 (82%), Positives = 71/78 (91%)
 Frame = +1

Query: 19  MXRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 198
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 199 SSEALEAGRICCNKYLVK 252
           +SEALEA RIC NKYLVK
Sbjct: 61  TSEALEAARICANKYLVK 78



 Score =  145 bits (352), Expect = 5e-36
 Identities = 68/101 (67%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
 Frame = +3

Query: 258 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 437
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 438 SDRWKAQVIEALRRAKFK-SRTSKDYVSKKWGFTKYERDEF 557
            D  +A  IEALRR ++K     +  VSKKWGF++Y RDE+
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEY 181


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  146 bits (355), Expect = 2e-36
 Identities = 64/78 (82%), Positives = 71/78 (91%)
 Frame = +1

Query: 19  MXRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 198
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 199 SSEALEAGRICCNKYLVK 252
           +SEALEA RIC NKYLVK
Sbjct: 61  TSEALEAARICANKYLVK 78



 Score =  145 bits (351), Expect = 6e-36
 Identities = 68/101 (67%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
 Frame = +3

Query: 258 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 437
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 438 SDRWKAQVIEALRRAKFK-SRTSKDYVSKKWGFTKYERDEF 557
            D  +A  IEALRR ++K     +  VSKKWGF++Y RDE+
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEY 181


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -1

Query: 667 IEDLSLNLPPSVERSMFRAVLHNAAV-ISEAALFTKLSNSSRSYFVKPHFFDT*SFDVRD 491
           +E L  N+ PS+   +  A + +A   + +  + TKL N  +S+ ++   ++  SF V  
Sbjct: 40  LEFLKQNINPSMLACVDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAI 99

Query: 490 LNLARRRASMTCAFHLSLERTD 425
            N+ ++       FH++ + T+
Sbjct: 100 ANVLQKSVWKGILFHVTYDGTE 121


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 43  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 219
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 220 G 222
           G
Sbjct: 94  G 94


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 100 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 219
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +1

Query: 121  DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNAERI 267
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN +++
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKL 1086


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -3

Query: 392  STLRLAKRTTHPSLEPISSS-A**HFIDADNVERVKSHADMELILSAFFTRYLLQQIRPA 216
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+   IL  F  +   +Q    
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAND--ILHLFKKKAKSEQSNAK 1014

Query: 215  SKASELSCSYSSDT 174
            S +S +  S    T
Sbjct: 1015 SSSSSIKESKKMKT 1028


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 RERPLTTFHCACTWCPTNMNS 196
           R RP +T H +CT+C   + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 132 LTQIEDTDLGIRYTPTEPRFRIRFIFAVPVASCWPAPH 19
           L Q++++ L +  T T P   +R      V SC+P  H
Sbjct: 408 LHQLQNSILRVNSTLTSPSLDLRLELLHDVLSCFPKKH 445


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 219  CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 103
            CL  L   L   + H++ ++W+ +N R LL + +  + G
Sbjct: 940  CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 261 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 365
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = -1

Query: 235 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 80
           C++ + PP KP + SA+      S  T E    S      LS    +R+ +W    P   
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553

Query: 79  SISDTVYFCSTGSIL 35
             SD +   + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 86  VGVYLIPRSVSSIWV 130
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,258
Number of Sequences: 5004
Number of extensions: 67023
Number of successful extensions: 211
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)