Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00259
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 146 1e-35
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 144 4e-35
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 142 2e-34
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.1
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.5
08_02_0451 + 17297293-17297793,17297866-17298130,17298215-172984... 29 3.5
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 3.5
01_05_0781 + 25140652-25142010 29 3.5
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 29 4.6
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.1
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 146 bits (355), Expect = 1e-35
Identities = 70/104 (67%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Frame = +3
Query: 249 KECGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 428
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 429 VRSSDRWKAQVIEALRRAKFK-SRTSKDYVSKKWGFTKYERDEF 557
VR EALRRAKFK K S+KWGFTK+ RDE+
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEY 177
Score = 117 bits (281), Expect = 1e-26
Identities = 51/73 (69%), Positives = 60/73 (82%)
Frame = +1
Query: 40 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 219
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 220 GRICCNKYLVKNA 258
RI CNKY+ K+A
Sbjct: 64 ARIACNKYMTKSA 76
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 144 bits (350), Expect = 4e-35
Identities = 68/104 (65%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Frame = +3
Query: 249 KECGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 428
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 429 VRSSDRWKAQVIEALRRAKFKSRTSKDYV-SKKWGFTKYERDEF 557
VR + EALRRAKFK + + S+KWGFTK+ R+E+
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEY 181
Score = 136 bits (329), Expect = 2e-32
Identities = 60/80 (75%), Positives = 67/80 (83%)
Frame = +1
Query: 19 MXRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 198
M RRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 199 SSEALEAGRICCNKYLVKNA 258
SSEALEA RI CNKY+ KNA
Sbjct: 61 SSEALEAARIACNKYMTKNA 80
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 142 bits (345), Expect = 2e-34
Identities = 68/104 (65%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = +3
Query: 249 KECGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 428
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 429 VRSSDRWKAQVIEALRRAKFKSRTSKDYV-SKKWGFTKYERDEF 557
VR D A EALRRAKFK + + S KWGFT+++RDE+
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEY 488
Score = 132 bits (319), Expect = 3e-31
Identities = 57/76 (75%), Positives = 65/76 (85%)
Frame = +1
Query: 31 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 210
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 211 LEAGRICCNKYLVKNA 258
LEA RI CNKY+ K+A
Sbjct: 372 LEAARIACNKYMAKHA 387
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 421 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 329
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 142 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVK 252
T D P C +HL SD Y S E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>08_02_0451 +
17297293-17297793,17297866-17298130,17298215-17298410,
17298437-17298864,17298923-17299200,17299298-17299588
Length = 652
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 543 ERDEFESFVKRAASLMTAALCSTARNMDLSTLGGRFRLRS 662
E DE S +KR A + AA CST R M G + RLR+
Sbjct: 542 EFDEGYSAIKRLAVRILAAHCSTERTMRACLDGFKNRLRA 581
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -3
Query: 314 DADNVERVKSHADMELILSAFFTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 150
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 149 STVA 138
+ ++
Sbjct: 203 AHIS 206
>01_05_0781 + 25140652-25142010
Length = 452
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 423 MSVRSSDRWKAQVIEALRRAKFKSRTSKDYV---SKKWGFTKYERDEFESFVKRAASLMT 593
++V + + A +I A ++AK + K SKKW + ER+ +F+K A + T
Sbjct: 220 VTVHADQAYFAGLINAEQKAKVEEMQDKTVSLIKSKKWAAARRERNRIIAFLKNATGVAT 279
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 11 RSPXGAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 181
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 375 GKPQGTVARVRIGQPIMSVRSSD 443
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,745,283
Number of Sequences: 37544
Number of extensions: 507933
Number of successful extensions: 1378
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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