Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00259
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         70   2e-12
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          29   2.7  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)               29   2.7  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           29   3.6  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 29   3.6  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              29   4.7  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   6.2  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   8.3  
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   28   8.3  
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)                    28   8.3  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 34/44 (77%), Positives = 37/44 (84%)
 Frame = +3

Query: 360 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFK 491
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFK 44


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 23  GAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 157
           G G    T     N++  +G V   LIP+   +I VR  +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 214 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 98
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
          Length = 730

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 317 IDADNVERVKSHADMELILSAFFTRYLLQQIRPASKASELSCSYSSDTK 171
           + A+ V+R+ SH  M+ + S     Y     +PA+K + L C Y+   K
Sbjct: 16  LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 242 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 111
           Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 242  YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 111
            Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 411 QCEHVLQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYG 271
           +C  V Q P AC   + S  GA +       Y C    K  V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 46  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 225
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 226 IC 231
           +C
Sbjct: 500 MC 501


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 368 CVWQASGYCSTCSHWTAHHV 427
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 501 SKDYVSKKWGFTKYERDEFESFVKRAASLMTAALCSTARNMDLSTLGGRFR 653
           SKD   + +   K + D +   ++ + S M  A+C         TLGGRFR
Sbjct: 133 SKDAKDRYFESHKSQFDSYFRTIRYSYSPMDIAVCVVGSLFVFKTLGGRFR 183


>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = +1

Query: 244 LVKNAERISSISA*DFTLSTLSASIKCYHALELIGSRL 357
           L+ + +++  ++  D T+ST +  ++C + ++L+G RL
Sbjct: 726 LICSKQKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 763


>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
          Length = 1123

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 346 GSRLGCVVRLASLRVL*-HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSPGRQKTTYQR 522
           G R+  V++   L  L  ++FAL S  C C  +T    +   + AV  +  G ++TT ++
Sbjct: 554 GDRIDYVLQERPLESLNEYLFALSSHVCYCLELTNAHAQRDSIAAVGRAFYGHKQTTTRK 613

Query: 523 SGVS 534
           + V+
Sbjct: 614 NRVA 617


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,315,960
Number of Sequences: 59808
Number of extensions: 552475
Number of successful extensions: 1742
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)