Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00259
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   144   5e-35
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   5.5  
Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   9.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   9.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   9.6  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  144 bits (349), Expect = 5e-35
 Identities = 64/79 (81%), Positives = 68/79 (86%)
 Frame = +1

Query: 19  MXRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 198
           M RRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 199 SSEALEAGRICCNKYLVKN 255
           SSEALEA RIC NKY+VKN
Sbjct: 61  SSEALEAARICANKYMVKN 79



 Score =  140 bits (340), Expect = 7e-34
 Identities = 67/105 (63%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
 Frame = +3

Query: 249 KECGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 428
           K CGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S
Sbjct: 78  KNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFS 137

Query: 429 VRSSDRWKAQVIEALRRAKFKSRTSKDYV-SKKWGFTKYERDEFE 560
           +R  +      IEA RRAKFK    +  V S+KWGFTK++R+++E
Sbjct: 138 MRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYE 182



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 563 LREEGRLANDGCIVQYRPEHGPLDAW 640
           +R EGRL +DG  VQ + EHGPL  W
Sbjct: 184 MRAEGRLRSDGVGVQLQREHGPLTKW 209


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 452 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 330
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 33   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 122
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1042 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1071


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 33   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 122
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 33   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 122
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 382 GLPNAPRIPVWSLSAPA 332
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 79  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 225
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical
           protein F36A2.4 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 495 RTSKDYVSKKWGFTKYERDEFES 563
           + +KDYV K W   K +RD++++
Sbjct: 57  QNAKDYVDKLWSVAKRDRDKYKN 79


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 141 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 40
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 141 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 40
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 141 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 40
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,585,889
Number of Sequences: 27780
Number of extensions: 398709
Number of successful extensions: 1101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)