Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00259
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 143 1e-34
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 142 3e-34
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 140 6e-34
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 31 0.73
At5g48310.1 68418.m05968 expressed protein 31 0.96
At5g64970.1 68418.m08172 mitochondrial substrate carrier family ... 30 1.7
At4g37100.1 68417.m05255 hypothetical protein 29 2.2
At1g20410.1 68414.m02545 expressed protein 29 2.9
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 5.1
At4g24120.1 68417.m03462 transporter, putative similar to iron-p... 28 5.1
At2g18876.1 68415.m02201 expressed protein 27 8.9
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 143 bits (346), Expect = 1e-34
Identities = 69/104 (66%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Frame = +3
Query: 249 KECGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 428
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 429 VRSSDRWKAQVIEALRRAKFK-SRTSKDYVSKKWGFTKYERDEF 557
VR D EALRRAKFK K VS+KWGFTK+ R E+
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEY 181
Score = 136 bits (329), Expect = 1e-32
Identities = 83/178 (46%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Frame = +1
Query: 19 MXRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 198
M RRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 199 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYHALEL-------IG 348
SSEALEA RI CNKY+VK+A + + I F + ++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 349 SRLGCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSPGRQKTTYQR 522
LG R+A +VL V D+ G H L PGRQK R
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDN---------HGVHAQEALRRAKFKFPGRQKIIVSR 169
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 142 bits (343), Expect = 3e-34
Identities = 69/104 (66%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Frame = +3
Query: 249 KECGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 428
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 429 VRSSDRWKAQVIEALRRAKFK-SRTSKDYVSKKWGFTKYERDEF 557
VR D EALRRAKFK K VS+KWGFTK+ R +F
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADF 181
Score = 137 bits (332), Expect = 6e-33
Identities = 83/178 (46%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Frame = +1
Query: 19 MXRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 198
M RRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 199 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYHALEL-------IG 348
SSEALEA RI CNKY+VK+A + + I F + ++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 349 SRLGCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSPGRQKTTYQR 522
LG R+A +VL V D+ G H L PGRQK R
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDA---------HGHHAQEALRRAKFKFPGRQKIIVSR 169
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 140 bits (340), Expect = 6e-34
Identities = 68/104 (65%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Frame = +3
Query: 249 KECGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 428
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 429 VRSSDRWKAQVIEALRRAKFK-SRTSKDYVSKKWGFTKYERDEF 557
VR D EALRRAKFK K VS+KWGFTK+ R ++
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADY 181
Score = 137 bits (331), Expect = 7e-33
Identities = 83/178 (46%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Frame = +1
Query: 19 MXRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 198
M RRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 199 SSEALEAGRICCNKYLVKNAERIS---SISA*DFTLSTLSASIKCYHALEL-------IG 348
SSEALEA RI CNKY+VK+A + + I F + ++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 349 SRLGCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSPGRQKTTYQR 522
LG R+A +VL V D+ G H L PGRQK R
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDA---------HGHHAQEALRRAKFKFPGRQKIIVSR 169
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.1 bits (67), Expect = 0.73
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -1
Query: 595 AVISEAALFTKLSNSSRSYFVKPHFFDT*SFDVRDLNLARRRASMTCAFHLSLERTDMMG 416
A+I+ + F +SNSS S+ + FF SF +LN R + + HL + +
Sbjct: 3 ALIASTSFFVPISNSSSSHIINNRFFP--SFYSPNLNFGTFRKTSLSSSHLVFSSSAISA 60
Query: 415 CPMRTRAT 392
P T T
Sbjct: 61 PPSSTVLT 68
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 195 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAPH 19
LF+ + +++ A K+ N L + I+ +L T+ R+R F+ AVP SC P PH
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLPH 793
>At5g64970.1 68418.m08172 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 428
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 447 WKAQVIEALRRAKFKSRTSKDYVSKKWGFTKYERDE----FESFVKRAASLMTAAL 602
WK ++ LR A FKS Y + + K +E FE FV AA+ +TA+L
Sbjct: 185 WKGNLVNILRTAPFKSINFYAYDTYRGQLLKLSGNEETTNFERFVAGAAAGVTASL 240
>At4g37100.1 68417.m05255 hypothetical protein
Length = 896
Score = 29.5 bits (63), Expect = 2.2
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Frame = +1
Query: 172 LVSDEYEQLSSEALEAGRICCNKYLVKNAERISSISA*DFTLSTLSASIKCYHALELIGS 351
L SDEY LSS A + C L + + F+LS ++A++ HAL G+
Sbjct: 138 LRSDEYSHLSSSASKVCLDYCGFGLFSYVQTLHYWDTCTFSLSEITANLS-NHAL-YGGA 195
Query: 352 RLGCVVRLASLRVL*HVFALDSPSCPCALV-TGGRHRSSRLCA--VPSSSPGRQKTTYQR 522
G V R++ + L+ P LV T R + RL A P S R T +
Sbjct: 196 ESGTVEHDIKTRIMDY---LNIPENEYGLVFTVSRGSAFRLLAESYPFQSNKRLLTMFDH 252
Query: 523 SGVSQSMNVMSLRAS*RG 576
SQS+N M+ A +G
Sbjct: 253 E--SQSVNWMAQTAREKG 268
>At1g20410.1 68414.m02545 expressed protein
Length = 504
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 459 VIEALRRAKFKSRTSKDYVSKKWGFTKYERDEFESF 566
V +++ KS +S DYV++ K +R EF+SF
Sbjct: 108 VFSDVKKELVKSDSSSDYVARITDLVKQDRHEFDSF 143
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 178 SDEYEQLSSEALEAGRICCNKYLV 249
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At4g24120.1 68417.m03462 transporter, putative similar to
iron-phytosiderophore transporter protein yellow stripe
1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
OPT oligopeptide transporter protein
Length = 665
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 244 LVKNAERISSISA*DF-TLSTLSASIKCYHALELIGSRLGCVVRLASLRVL*HVFALDSP 420
L+K+ +S I DF T S K A ++IG+ +GC+V S + F + +P
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527
Query: 421 S 423
+
Sbjct: 528 N 528
>At2g18876.1 68415.m02201 expressed protein
Length = 382
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 323 HFIDADNVERVKSHADMELILSAFFTRYLLQQIRPASKASELSCSYS 183
+F D DN+E + + L+ S F L P S A +C Y+
Sbjct: 27 NFADVDNLENCIKYLNQSLVTSGFSASLDLFATDPVSIARTCNCVYA 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,670,977
Number of Sequences: 28952
Number of extensions: 374472
Number of successful extensions: 1091
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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