Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00258
         (769 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0YC48 Cluster: ATP-dependent helicase HrpB; n=1; marin...    33   7.8  
UniRef50_A6R3N0 Cluster: Predicted protein; n=1; Ajellomyces cap...    33   7.8  
UniRef50_Q09216 Cluster: Uncharacterized protein B0495.7; n=2; C...    33   7.8  

>UniRef50_A0YC48 Cluster: ATP-dependent helicase HrpB; n=1; marine
           gamma proteobacterium HTCC2143|Rep: ATP-dependent
           helicase HrpB - marine gamma proteobacterium HTCC2143
          Length = 909

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 489 SDSLVQHWVIGSCPPHATP--SVPCERHLLSPSIHFRTLHRMWIIINLIILFDEPIPFWN 662
           ++  + HWV+    PH T   S+P    L    +  RT+++  +   L +L  +  P  N
Sbjct: 448 NEPALDHWVL---TPHGTQLVSLPIHPRLAHMLLRSRTINQQKVAAALAVLLTDRSPLSN 504

Query: 663 RFIGNLTIELA 695
           RF  ++T ++A
Sbjct: 505 RFDTDITTQIA 515


>UniRef50_A6R3N0 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 175

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +1

Query: 379 VVFIMYTIPFLHALICRSRSARIVIDPPYLVVGTCGSLIVSYSIGSSVLVRRTPRPRFRV 558
           ++ ++  +    +LI  SRS+++   P +L+  +  S +  YS GS    RRTP  R   
Sbjct: 9   MILVLSIVSMKISLIAASRSSQVTRTPKWLLSPSKFSSL--YSHGSGTNQRRTPATRAAQ 66

Query: 559 NVICFRPQFIFAHYIACG 612
           ++   R   +  HY   G
Sbjct: 67  SLDAQRMDLLLMHYYPAG 84


>UniRef50_Q09216 Cluster: Uncharacterized protein B0495.7; n=2;
           Caenorhabditis|Rep: Uncharacterized protein B0495.7 -
           Caenorhabditis elegans
          Length = 895

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 493 IVSYSIGSSVLVRR-TPRPRFRVNVICFRPQFIFAHY 600
           I+ +++G   ++RR TPR  F   + CF P F+FA Y
Sbjct: 527 IIIWALGLFGVIRRVTPRVLFFTQLFCFLPTFVFAAY 563


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,395,854
Number of Sequences: 1657284
Number of extensions: 13246115
Number of successful extensions: 29005
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28961
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)