Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00258
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    28   1.3  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    27   3.9  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   5.2  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    26   5.2  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   6.8  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.8  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.0  

>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = +2

Query: 518 RFLSAARHALGSV*TSFAFALNSFSHTTSHVDYYQFDYFIR*TYTVLESIYWKLDNRAC 694
           RF+  ARH    + T   F LN F    S   Y   D F+   Y +   +   +    C
Sbjct: 182 RFIELARHENPKIRTDALFCLNQFVLIQSQSLYAHIDTFLETCYALATDVSPNVRKNVC 240


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 588 NELRAKANDVHTEPRAWRAADKN 520
           +EL AK   +H E  AWRA   N
Sbjct: 186 DELSAKLTQLHNEEAAWRAVAAN 208


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 590 SHTTSHVDYYQFDYFIR 640
           SH    +DYY +DYF++
Sbjct: 32  SHPNESLDYYIYDYFVK 48


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 492 DSLVQHWVIGSCPPHATPSVPCERHLLSPSIHFRTLHRMWIIINLIILFDEPIPFWNRFI 671
           DS V H+ +  C  H    +  ++HL     HF  L     + ++ +  DE + FW +  
Sbjct: 282 DSFVSHFPL--CAKHLHEVLKRDKHLR----HFGRLQYGLFLKDIGLSVDEALVFWRKSF 335

Query: 672 GNLT 683
            N+T
Sbjct: 336 TNVT 339


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 645 PIPFWNRFIGNLTIELATSKMIEMLNLPTCLPSVE 749
           PI   ++ +   +IE+ TSK+  +L L   LP+VE
Sbjct: 646 PITDSHKILFKKSIEVITSKIRRLLKLDVYLPTVE 680


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 121 F*IFVYIIWCVHDNVHILNKRRILKHNI 38
           F + VY++W   ++VH+L K R  +++I
Sbjct: 98  FSVPVYVVWGACEDVHVLEKFRSGEYSI 125


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 390 YVYNSVFTCINL*IPKRSNRY*PSVLSCGHLW*SDSLVQ 506
           Y ++SVFTC  +   + +    P ++SCGH+   +SL Q
Sbjct: 333 YHFHSVFTC-PVSKEQATEENPPMMMSCGHVIVKESLRQ 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,085
Number of Sequences: 5004
Number of extensions: 60364
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)