Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00258
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)           30   2.4  
SB_5138| Best HMM Match : Herpes_UL3 (HMM E-Value=2.3)                 29   4.1  
SB_3538| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-29)                  28   7.2  

>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
          Length = 642

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 460 PYLVVGTCGSLIVSYSIGSSVLV--RRTPRPRFRVNVICFRP 579
           PY++V +C  L V+      +L+  RRTPRPR+ V  +   P
Sbjct: 468 PYVIVVSCVFLFVALVSVVMILLQPRRTPRPRYHVPCVPLIP 509


>SB_5138| Best HMM Match : Herpes_UL3 (HMM E-Value=2.3)
          Length = 567

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 463 YLVVGTCGSLIVSYSIGSSVLVRRTPRPRFRVN 561
           YLV  TC S++  +S+G+  LV  TP P+  VN
Sbjct: 413 YLV--TCSSVVQFWSLGTLDLVSATPLPKLCVN 443


>SB_3538| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-29)
          Length = 266

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 10  IMVYILICLIYYVLKFVAYLIYVRYHVHTILYR-QISRKTNNEM 138
           ++V+ILI  I  +  +V  L  VR+HVH    R     KT N +
Sbjct: 164 VVVFILIPCIVMIWVYVRLLCVVRHHVHRNRKRASAGNKTGNRV 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,513,310
Number of Sequences: 59808
Number of extensions: 433683
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)