Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00258
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr... 28 8.4
>U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical
protein B0495.7 protein.
Length = 895
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 493 IVSYSIGSSVLVRR-TPRPRFRVNVICFRPQFIFAHY 600
I+ +++G ++RR TPR F + CF P F+FA Y
Sbjct: 527 IIIWALGLFGVIRRVTPRVLFFTQLFCFLPTFVFAAY 563
>Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 498 LVQHWVIGSCPPHATPSVPCERHLLSPSIHFRTLHRMWIIINLIILFDEPIPFWNRFIGN 677
+++ +V+ + S+ E HL+S SI+ L MW + L +P+ W F N
Sbjct: 297 VIERFVVNVISTRSVSSI--ETHLVSQSIY---LFSMWFALKLAHPSAQPVAAWVFFTSN 351
Query: 678 L 680
L
Sbjct: 352 L 352
>Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 498 LVQHWVIGSCPPHATPSVPCERHLLSPSIHFRTLHRMWIIINLIILFDEPIPFWNRFIGN 677
+++ +V+ + S+ E HL+S SI+ L MW + L +P+ W F N
Sbjct: 297 VIERFVVNVISTRSVSSI--ETHLVSQSIY---LFSMWFALKLAHPSAQPVAAWVFFTSN 351
Query: 678 L 680
L
Sbjct: 352 L 352
>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical protein
F13D2.1 protein.
Length = 1342
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 722 VKHFDHF*SSKLDCQVSNKSIPKRYR 645
+ H D F S DCQ N +I RYR
Sbjct: 1317 LNHMDRFEESSYDCQNLNSAITIRYR 1342
>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical protein
F13D2.1 protein.
Length = 1342
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 722 VKHFDHF*SSKLDCQVSNKSIPKRYR 645
+ H D F S DCQ N +I RYR
Sbjct: 1317 LNHMDRFEESSYDCQNLNSAITIRYR 1342
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,437,652
Number of Sequences: 27780
Number of extensions: 337306
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -