Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00258
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   9.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 326 LNCKSNFNSVYDSRKPMKIQNCIIIHHNTSFIIQWD 219
           L+C  NF       +  K+Q   + H     I QWD
Sbjct: 161 LSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWD 196


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -2

Query: 141 MHFVVCFSRYLS 106
           ++F++CFS+ LS
Sbjct: 132 LNFIICFSKLLS 143


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 258 YTILYFHRFSRIVD 299
           Y ILYFH  S I +
Sbjct: 252 YKILYFHAMSSIAE 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,609
Number of Sequences: 438
Number of extensions: 4157
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)