Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00257
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    75   9e-15
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    30   0.33 
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    28   1.3  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   2.4  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   5.4  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    26   5.4  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   9.5  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   9.5  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 2/170 (1%)
 Frame = +3

Query: 264 YTGFAKLYRLMFVADHCPSLRLEALKMAISYVMT-TYNVNLYHTLHKKLSEAVASAGLPD 440
           Y  ++K++R +FVA +   LR   +  AI  +   TYN+ LY +L ++  +   +  L  
Sbjct: 19  YGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQDCFENEQL-- 76

Query: 441 IAGSQDIPVLDTIWVESKQ-KKLPKTGKARY*FEKL*NKFNQESIRRGHDDLGDHYLDCG 617
                     D  WVES    +     + R   +   N   +ESIR    DL   + D G
Sbjct: 77  ----------DVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQLDLASFFADVG 126

Query: 618 DLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWAHVLNYVSKVK 767
              SAL+ Y++ R+YCT+   +  + L ++++S+++ N++HVL + S+ K
Sbjct: 127 QFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIGNYSHVLAFGSRAK 176


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
 Frame = -3

Query: 241 PRWGFQRRSIPSHCF---HYL----LGEYQPALV 161
           P WG+ R +IP H     HY+     GEY PALV
Sbjct: 172 PGWGYGRSNIPFHSLNFTHYIEELSFGEYYPALV 205


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 404 FFMQCVIQIYVICGHDIGYGHFQSFQSQ*RTVVCYKHEPIKFCKTSI 264
           F  +CV++ Y     + G   F+SF       + ++HE I+FCK ++
Sbjct: 140 FLRKCVVE-YEQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKINV 185


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 777 SGVASL*IHNLEHEPNFEDILK 712
           SG+A + +H+LEH  N E ++K
Sbjct: 438 SGIAEIEVHSLEHPANNESLVK 459


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 127 NPPIMFEMNTAEPMQVDIPPEDNENNET---ECYVVENPTLD 243
           +PP   E+     +    PP D E NET   E  ++E P+ D
Sbjct: 14  DPPSYEEVALHSALNNSAPPNDGEQNETSMEEMEIIEPPSED 55


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 34  NTKRVVKLRFSDELVFIVDSKFRVFSLKK 120
           N KR+V+    DEL  +VD K   F+ KK
Sbjct: 70  NGKRIVQKAVFDELCSLVDPKVDAFTPKK 98


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 171 LHWFSCVHFEHYWRV 127
           + WFSC HF   W+V
Sbjct: 345 MSWFSCNHFYPEWKV 359


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -2

Query: 68  SENRNFTTLLVFFNKYLY 15
           +E++N +T L+F+NK++Y
Sbjct: 56  NESQNVSTRLIFWNKWIY 73


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 247 PDPRWGFQRRSIPSHCFH 194
           PD +W F R S+ SH F+
Sbjct: 295 PDTKWIFPRESVLSHVFN 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,325
Number of Sequences: 5004
Number of extensions: 66943
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)