Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00257
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91... 105 5e-23
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 31 0.80
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 31 1.4
05_04_0238 - 19311916-19312299,19312606-19312662 30 2.5
11_06_0210 + 21296782-21296909,21297135-21298844,21299127-212994... 29 3.2
01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653... 29 4.3
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 29 5.7
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 29 5.7
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 28 7.5
05_06_0230 + 26585439-26586608 28 7.5
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 28 9.9
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 28 9.9
>03_01_0115 -
915142-915321,915397-915631,916301-916386,916474-916590,
917271-917591,918386-918772
Length = 441
Score = 105 bits (251), Expect = 5e-23
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 4/180 (2%)
Frame = +3
Query: 255 AASYTGFAKLYRLMFVADHC--PSLRLEALKMAISYVMTTYNVNLYHTLHKKLSEAVASA 428
AA YTG +L RL+F+A+ C ++ LEAL+MA + + + + K++ +
Sbjct: 40 AAQYTGRTRLARLLFIAERCGVEAVELEALRMAYDEIKRGEDTMFHREVTNKINGRLG-- 97
Query: 429 GLPDIAGSQDIPVLDTIWVESKQKKLP-KTGKARY*FEKL*NKFNQESIRRGHDDLGDHY 605
P A LD W +S ++ + K +ESIR G++D+GD +
Sbjct: 98 --PKYA-------LDQAWTDSVNRRAEQRKEKLESELNGYRTNLIKESIRMGYNDIGDFF 148
Query: 606 LDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWAHVLNYVSKVKR-PQTL 782
G L+ A K Y R RDYCT+ KH+V MC+NV+ VS+ L + HV NYVSK ++ P TL
Sbjct: 149 YAHGHLSDAFKSYIRTRDYCTTSKHIVQMCMNVILVSIELGQFPHVSNYVSKAEQTPDTL 208
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 31.5 bits (68), Expect = 0.80
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 130 PPIMFEMNTAEPMQVDI-PPEDNENNETECYVVENPTLDLE 249
PP+ ++ EP +DI PP++N ++ E YV + + LE
Sbjct: 420 PPVQETLHNPEPESIDIEPPKENTADDNERYVGSSSPVHLE 460
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 393 LHKKLSEAVASAGLPDIAG-SQDIPVLDTIWVESKQKKLPKTGK 521
LH+K E +A GLP I+G S + + + E+ KKL K GK
Sbjct: 716 LHQKDFELLAGRGLPRISGKSYSVEINGNVIDETTGKKLRKLGK 759
>05_04_0238 - 19311916-19312299,19312606-19312662
Length = 146
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -3
Query: 310 WSATN--MSL*SFAKPVYDAAMFPDPRWGFQRRSIPSHCFHYLLGEYQPALV--QLCS 149
WS+T+ L F V + + P PR QR S HCFH+ Y LV Q CS
Sbjct: 39 WSSTSDVAFLPLFPLQVIELRLLPGPRPAMQRFS---HCFHFKWSSYDYFLVLDQRCS 93
>11_06_0210 +
21296782-21296909,21297135-21298844,21299127-21299418,
21300210-21300519,21300890-21301110
Length = 886
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 564 ESIRRGH--DDLGDHYLDCGDLTSALKCYSRA 653
+ +R+G ++LG Y+DCG L A +CY A
Sbjct: 704 DRLRKGQALNNLGSVYVDCGKLDLAAECYINA 735
>01_01_0836 +
6527902-6528218,6529280-6529632,6529722-6529889,
6530004-6530051,6530142-6530372,6530435-6530548,
6530638-6530723
Length = 438
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 582 HDDLGDHYLDCGDLTSALKCY---SRARD--YCTSGKHLVMMCLNVVKVSVYLQNWAHVL 746
++DLGDHY D T+A + +RA + C+S HL +N + +Y+ H
Sbjct: 321 YEDLGDHYNDEETPTAACAIFNASTRAHESISCSSLDHLAF--VNSSSLFIYILGVLHSK 378
Query: 747 NYVSKVKRPQ 776
++V + PQ
Sbjct: 379 SWVRRCDDPQ 388
>10_08_0838 -
20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 591 LGDHYLDCGDLTSALKCYSRA 653
LG HY GD A KCY RA
Sbjct: 711 LGHHYALAGDAQRAAKCYQRA 731
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +3
Query: 609 DCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWAHVLNYVSKVK 767
DCG+ + A + R CT+ + + + + +QNW L+ ++++K
Sbjct: 139 DCGNYSDAAVYLYQYRALCTNSERSLSALWGKLAAEILMQNWDVALDELNRLK 191
>06_03_1190 - 28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +3
Query: 315 PSLRLEALKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVESK 494
P + A K+A T NVN Y LH + + + D AG+++ + + +
Sbjct: 893 PEIEEMAEKLATRMRNRTGNVNPYMALHLRFEKGMVGLSFCDFAGTREEKAM---MADYR 949
Query: 495 QKKLPKTGK 521
QK+ P+ K
Sbjct: 950 QKQWPRRFK 958
>05_06_0230 + 26585439-26586608
Length = 389
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 1 DET***RYLLKNTKRVVKL-RFSDELVFIVDSKFRVFSLKK 120
DET RYL+++ K+++ + R+S + S FRVF +KK
Sbjct: 235 DETVLARYLVESRKKLLMVVRYSSGRQHLPTSAFRVFQMKK 275
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 537 EKL*NKFNQ-ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKH 680
EKL +K N+ ++I++ +DDL L + L + A+D T+G H
Sbjct: 616 EKLLDKENELQNIKQENDDLQAKELVASEKIKELSVLANAKDGATNGSH 664
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 549 NKFNQESIRRG--HDDLGDHYLDCGDLTSALKCYSRA 653
N +++R+G ++++G Y+DC L A +CY+ A
Sbjct: 778 NSCASDNLRKGQAYNNMGSIYVDCDLLDEAAECYNIA 814
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,676,619
Number of Sequences: 37544
Number of extensions: 397724
Number of successful extensions: 857
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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